View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13628_low_8 (Length: 374)
Name: NF13628_low_8
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 23853055 - 23853420
Alignment:
| Q |
1 |
ttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853055 |
ttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttcta |
23853154 |
T |
|
| Q |
101 |
tccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaataggcatctcattttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853155 |
tccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaataggcatctcattttat |
23853254 |
T |
|
| Q |
201 |
tatgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcatatcttgagcacttatttatatttggggacacctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853255 |
tatgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcatatcttgagcacttatttatatttggggacacctt |
23853354 |
T |
|
| Q |
301 |
atattcaaacacaattgagtctctatgtaattgaactctagttaattggtatctatgatgatgtcc |
366 |
Q |
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| T |
23853355 |
atattcaaacacaattgagtctctatgtaattgaactctagttaattggtatctatgttgatgtcc |
23853420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 23752354 - 23752535
Alignment:
| Q |
1 |
ttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttcta |
100 |
Q |
| |
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|||||| |||||||||||||||||||||| || |||||||||||||||||| |||| |||||||| |||||||| ||||||| |||||||||||||| |
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| T |
23752354 |
ttgttctatgcaaccaaatgatgaatggctactagaacatagtaacatgaaacatgtgctcaaaagggaaacaacaacaaaagcataactttggtttcta |
23752453 |
T |
|
| Q |
101 |
tccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaatagg |
187 |
Q |
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| T |
23752454 |
tgcatatttgagggaagtgaatgaagcaacgctgtaagttgggtgggcacaacg-----gggactcaaccaacacaacttaaatagg |
23752535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 22619747 - 22619863
Alignment:
| Q |
1 |
ttgttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttcta |
100 |
Q |
| |
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|||||| | |||||||||||||||||||| || |||||||||||||||||| |||| |||||||| |||||||| ||||||| |||||||||||||| |
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| T |
22619747 |
ttgttctaagcaaccaaatgatgaatggctactagaacatagtaacatgaaacatgtgctcaaaagggaaacaacaacaaaagcataactttggtttcta |
22619846 |
T |
|
| Q |
101 |
tccatatttaagggaag |
117 |
Q |
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| ||||||| ||||||| |
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| T |
22619847 |
tgcatatttgagggaag |
22619863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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