View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13628_low_9 (Length: 336)
Name: NF13628_low_9
Description: NF13628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13628_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 24471764 - 24471440
Alignment:
| Q |
1 |
aatataacgttctatttattttatttttgtgtaatttaaaagaaactattccaaaaaatgtccaaggnnnnnnnnnnnnn--aacagtttttattatatt |
98 |
Q |
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| T |
24471764 |
aatataaccttctatttattttatttttgtgtaatttaaaagaaactattccaaaaaatgtccaaggtttttttttttgtttaacattttttattatatt |
24471665 |
T |
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| Q |
99 |
ctttgctgtt---------ggttgcactttcatttctagaggttgtgatcatccgttattacttaacaaagttttcttttatatttccaatgatacctct |
189 |
Q |
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| T |
24471664 |
ctttgctgttaaaaactttgtttgcactttcatttctagcggttgtgatc---cgttataacttaacaaagttttcttttatattttcaatgatacctct |
24471568 |
T |
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| Q |
190 |
tcttggatgagaaggacgacgttatgcatgtacattagataagcaagaaagataatgggacagacataatttggtctctgaaacaccaccataggcagat |
289 |
Q |
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| T |
24471567 |
tcttgcatgacaaggacgacgttatgcatgtacattagataaacaagaaagataatgggacagacataatttggtctctgaaacaccaccataggcagat |
24471468 |
T |
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| Q |
290 |
gctagggtggatgagtgaagcaagtaat |
317 |
Q |
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| T |
24471467 |
gctagggtggatgactgaagcaagtaat |
24471440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 111 - 317
Target Start/End: Complemental strand, 24481709 - 24481506
Alignment:
| Q |
111 |
ttgcactttcatttctagaggttgtgatcatccgttattacttaacaaagttttcttttatatttccaatgatacctcttcttggatgagaaggacgacg |
210 |
Q |
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| T |
24481709 |
ttgcactttcatttctagcggttgtgatc---cgttataacttaacaaagttttcttttatattttcaatgatacctcttcttgcatgataaggacgacg |
24481613 |
T |
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| Q |
211 |
ttatgcatgtacattagataagcaagaaagataatgggacagacataatttggtctctgaaacaccaccataggcagatgctagggtggatgagtgaagc |
310 |
Q |
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| T |
24481612 |
ttatgcatgtacattagataaacaagaaagataatgggacagacataatttggtctctgaaacaccaccataggcagatgatagggtggatgagtgaagc |
24481513 |
T |
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| Q |
311 |
aagtaat |
317 |
Q |
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| T |
24481512 |
aagtaat |
24481506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 24467467 - 24467401
Alignment:
| Q |
1 |
aatataacgttctatttattttatttttgtgtaatttaaaagaaactattccaaaaaatgtccaagg |
67 |
Q |
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| T |
24467467 |
aatataacgttctgtttattttatttttgtgtaatgaaaaagaaactattccaaaaaatgtccaagg |
24467401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 24467339 - 24467287
Alignment:
| Q |
111 |
ttgcactttcatttctagaggttgtgatcatccgttattacttaacaaagttttct |
166 |
Q |
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| T |
24467339 |
ttgcactttgatttctagcggttgtgatcg---gttattacttaacaaagttttct |
24467287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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