View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13629_high_11 (Length: 237)
Name: NF13629_high_11
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13629_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 7278980 - 7279206
Alignment:
| Q |
11 |
atcatcacaaaactgagatgtaaatattagataaggaatgagataaataatgtaataaaaattaacaataagatcttaaatacttgcagctgagtataac |
110 |
Q |
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| T |
7278980 |
atcatcacaaaactgagatgtaaatattagataaggaatgagataaataatgtaataaaaattaacaataagatcttaaatacttgcagctgagtataac |
7279079 |
T |
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| Q |
111 |
aatatcttagaatgtctgaaactaaactgcggagaacttaaacattgaaccaaaaacttacnnnnnnnnnnnnngtctgacagtacactagatgtaacaa |
210 |
Q |
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| T |
7279080 |
aatatcttagaatgtctgaaactaaactgcggagaacttaaacattgaaccaaaaacttacaaaaattaaaaaagtctgacagtacactagatgtaacaa |
7279179 |
T |
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| Q |
211 |
aaatgtcaaaccatacactcaaaacat |
237 |
Q |
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| T |
7279180 |
aaatgtcaaacaatacactcaaaacat |
7279206 |
T |
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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 18173910 - 18173998
Alignment:
| Q |
11 |
atcatcacaaaactgagatgtaaatattagataaggaatgagataaataatgtaataaaaattaacaataagatcttaaatacttgcagctga |
103 |
Q |
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| T |
18173910 |
atcatcaaaaaactgagatgtaa-tattagataaggaac---ataaatatagtaataaaaattaacaataagatctcaaatacttgcaactga |
18173998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 18225891 - 18225803
Alignment:
| Q |
11 |
atcatcacaaaactgagatgtaaatattagataaggaatgagataaataatgtaataaaaattaacaataagatcttaaatacttgcagctga |
103 |
Q |
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||||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
18225891 |
atcatcaaaaaactgagatgtaa-tattagataaggaac---ataaatatagtaataaaaattaacaataagatctcaaatacttgcaactga |
18225803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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