View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13629_high_12 (Length: 235)
Name: NF13629_high_12
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13629_high_12 |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 22470031 - 22470248
Alignment:
| Q |
18 |
tctcttttaatttttatgactcaaaatgattcacttagttcctgatttattcttttacaagaaatcacaagtcacatattgctggtacataatatttctt |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
22470031 |
tctcttttaatttttatgactcaaaatgattcatttagttcctgatttattcttttacaagaaatcacaagttacatattgcaggtacataatatttctt |
22470130 |
T |
|
| Q |
118 |
gtcacttctacagtgttttgtcttgtttcataatgtgagttaagttgcgtgtgaccttgaattcttctttgctatgtccgaagattggatccccttaaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
22470131 |
gtcacttctacagtgttttgtcttgtttcataatgtgagttaagttgcgtgtgaccttgaattcttctttgctatgtccgaagcttggatccccttgaac |
22470230 |
T |
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| Q |
218 |
ttgagaagttagaaagac |
235 |
Q |
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|||||||||||||||||| |
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| T |
22470231 |
ttgagaagttagaaagac |
22470248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 8989220 - 8989157
Alignment:
| Q |
169 |
tgaccttgaattcttctttgctatgtccgaagattggatccccttaaatttgagaagttagaaa |
232 |
Q |
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|||||||||||||||| ||||||||||| ||| ||||||| |||||| ||||||||||||||| |
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| T |
8989220 |
tgaccttgaattcttcgttgctatgtccaaagcttggatcggcttaaacttgagaagttagaaa |
8989157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 22471649 - 22471708
Alignment:
| Q |
176 |
gaattcttctttgctatgtccgaagattggatccccttaaatttgagaagttagaaagac |
235 |
Q |
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|||||||| ||| |||||| |||| |||||||||||| || |||||||||||||||||| |
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| T |
22471649 |
gaattcttattttctatgtttgaagcttggatccccttgaacttgagaagttagaaagac |
22471708 |
T |
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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 14800730 - 14800664
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaa--tttgagaagttagaaagac |
235 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| || | ||||||||||||||||| |
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| T |
14800730 |
accttgaattcttctttgctatgtccgaagcttggatcccctttaacttctgagaagttagaaagac |
14800664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 8363881 - 8363817
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaatttgagaagttagaaagac |
235 |
Q |
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|
||||||||| |||||||||||| ||| ||| |||||||||||| || |||| ||||||||||||| |
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| T |
8363881 |
accttgaatccttctttgctatatccaaagcttggatccccttgaacttgaaaagttagaaagac |
8363817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 27173927 - 27173864
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaatttgagaagttagaaaga |
234 |
Q |
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||||||| || ||||||| | ||| ||||| |||||||||||| || ||||||||||||||||| |
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| T |
27173927 |
accttgagtttttctttgttgtgttcgaagcttggatccccttgaacttgagaagttagaaaga |
27173864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 26883448 - 26883411
Alignment:
| Q |
173 |
cttgaattcttctttgctatgtccgaagattggatccc |
210 |
Q |
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||||||||||||||||||||||| |||| ||||||||| |
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| T |
26883448 |
cttgaattcttctttgctatgtctgaagcttggatccc |
26883411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 18830916 - 18830980
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaatttgagaagttagaaagac |
235 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||||||||||| || |||| ||||||||||||| |
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| T |
18830916 |
accttaaattcttctttgctatgtctgaagcttggatccccttcaacttgaaaagttagaaagac |
18830980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 27180259 - 27180217
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatcccctt |
213 |
Q |
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|||||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
27180259 |
accttgaattcttctttgctatgtccaaagatttgataccctt |
27180217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 27829801 - 27829759
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatcccctt |
213 |
Q |
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|||||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
27829801 |
accttgaattcttctttgctatgtccaaagatttgataccctt |
27829759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 18895865 - 18895928
Alignment:
| Q |
174 |
ttgaattcttctttgctatgtccgaagattggatccccttaaa--tttgagaagttagaaagac |
235 |
Q |
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||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
18895865 |
ttgaattcttctttgatatgtcggaagcttggatccccttaaatctttgagaagttagaaagac |
18895928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 21936028 - 21936092
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaatttgagaagttagaaagac |
235 |
Q |
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|||||||||||||||||||||||| ||||| || ||||||| || |||||||||||||||||| |
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| T |
21936028 |
accttgaattcttctttgctatgttcgaagcttagatcccccagaacttgagaagttagaaagac |
21936092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 9634110 - 9634044
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaa--tttgagaagttagaaagac |
235 |
Q |
| |
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|||| ||||||||||||| |||||| |||| |||||||||||| || ||||||||||||||||||| |
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| T |
9634110 |
acctcgaattcttctttgttatgtctgaagcttggatccccttgaacctttgagaagttagaaagac |
9634044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 7229982 - 7230045
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaa--tttgagaagttagaaa |
232 |
Q |
| |
|
||||||||||||| ||| |||||| |||| |||||||||||| || |||||||||||||||| |
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| T |
7229982 |
accttgaattcttattttctatgttggaagcttggatccccttgaacctttgagaagttagaaa |
7230045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 13603136 - 13603202
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaa--tttgagaagttagaaagac |
235 |
Q |
| |
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|||| ||||||||||||| |||||| |||| |||||||||||| || ||||||||||||||||||| |
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| T |
13603136 |
acctcgaattcttctttgttatgtctgaagcttggatccccttgaacctttgagaagttagaaagac |
13603202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 14118457 - 14118522
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaatttgagaag-ttagaaagac |
235 |
Q |
| |
|
|||| ||| |||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||| |
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| T |
14118457 |
acctcgaactcttattttctatgtccgaagattggatccccttgaacgtgagaagattagaaagac |
14118522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 22918758 - 22918697
Alignment:
| Q |
174 |
ttgaattcttctttgctatgtccgaagattggatccccttaaatttgagaagttagaaagac |
235 |
Q |
| |
|
|||||||||| ||| |||||| |||| ||||||||||||||| |||| ||||||||||||| |
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|
| T |
22918758 |
ttgaattcttattttctatgtttgaagtttggatccccttaaacttgaaaagttagaaagac |
22918697 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 22903911 - 22903849
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaatttgagaagttagaaag |
233 |
Q |
| |
|
||||||||||||| ||| |||||| ||| ||||||||||||||| |||| ||||||||||| |
|
|
| T |
22903911 |
accttgaattcttattttctatgtttgaaatttggatccccttaaacttgaaaagttagaaag |
22903849 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 22885955 - 22885891
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaatttgagaagttagaaagac |
235 |
Q |
| |
|
||||| ||||||| ||| |||||| ||| ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
22885955 |
accttaaattcttattttctatgtttaaagtttggatccccttaaacttgaaaagttagaaagac |
22885891 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 9471 - 9407
Alignment:
| Q |
171 |
accttgaattcttctttgctatgtccgaagattggatccccttaaatttgagaagttagaaagac |
235 |
Q |
| |
|
||||| ||||||| ||| |||||| ||| ||||||||||||||| |||| ||||||||||||| |
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|
| T |
9471 |
accttaaattcttattttctatgtttaaagtttggatccccttaaacttgaaaagttagaaagac |
9407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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