View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13629_high_2 (Length: 428)
Name: NF13629_high_2
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13629_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 5 - 418
Target Start/End: Original strand, 32844607 - 32845020
Alignment:
| Q |
5 |
tgttttactttcaaattttaatcatgactttgtacaaaaacacccggctgctataaatagtataagaaacaccggcacataaatggacaacagatacacg |
104 |
Q |
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| T |
32844607 |
tgttttactttcaaattttaatcatgactttgtacaaaaacacccggctgctataaatagtataagaaacaccggcacataaatggacaacagatacacg |
32844706 |
T |
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| Q |
105 |
acactaacaccgagacttatataccgataacagtttaagaaaatattaatgattatatgtaaccaaaaatgccgacacttatatacacgacaatattaga |
204 |
Q |
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| T |
32844707 |
acactaacaccgagacttatataccgataacagtttaagaaaatattaatgattatatgtaaccaaaaatgccgacacttatatacacgacaatattaga |
32844806 |
T |
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| Q |
205 |
cactcgaacacgccttggatatagtgtcagtgcgctacatatgtgattatatctaaaactaaaaattaagcttaatttctaggtgcctggaagcttgaaa |
304 |
Q |
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| T |
32844807 |
cactcgaacacgccttggatatagtgtcagtgcgctacatatgtgattatatctaaaactaaaaattaagcttaatttctaggtgcctggaagcttgaaa |
32844906 |
T |
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| Q |
305 |
agcatgattattggaagtttaacttaatttttaaagcataaataaatggacacatgattaagaatttaataatataaacaaaatgaaacagaaaaattgt |
404 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844907 |
agcatgattattggaagtttaacttaattttgaaagcataaataaatggacacatgattaagaatttaataatataaacaaaatgaaacagaaaaattgt |
32845006 |
T |
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| Q |
405 |
atgaagttgatgat |
418 |
Q |
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| T |
32845007 |
atgaagttgatgat |
32845020 |
T |
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