View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13629_high_3 (Length: 394)

Name: NF13629_high_3
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13629_high_3
NF13629_high_3
[»] scaffold0287 (3 HSPs)
scaffold0287 (260-375)||(16274-16389)
scaffold0287 (1-82)||(16566-16646)
scaffold0287 (139-194)||(16454-16509)
[»] chr7 (3 HSPs)
chr7 (260-375)||(3629696-3629811)
chr7 (1-82)||(3629439-3629519)
chr7 (139-194)||(3629576-3629631)
[»] chr3 (1 HSPs)
chr3 (139-187)||(11284189-11284237)
[»] chr2 (1 HSPs)
chr2 (139-187)||(12141745-12141793)


Alignment Details
Target: scaffold0287 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 16389 - 16274
Alignment:
Q  260 taattacatcacaaatctttgctgatccatgtaaccttttctttcacaggcttttatttttaaaagacaaaattacattaatactcataacacaaactat 359  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16389 taattacatcacaaatctttgctgatccatggaaccttttctttcacaggcttttatttttaaaagacaaaattacattaatactcataacacaaactat 16290  T
Q  360 aaatcataagctatgc 375  Q
    ||||||||||||||||    
T  16289 aaatcataagctatgc 16274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 16646 - 16566
Alignment:
Q  1 aaattagacttagggggtttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtaattaggtcgctatagg 82  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  16646 aaattagacttagggg-tttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtagttaggtcactatagg 16566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 16509 - 16454
Alignment:
Q  139 atggtatatgatagagcattattgcatcttttgattgatgtagccaacctcaaaga 194  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16509 atggtatatgatagagcattattgcatcttttgatcgatgtagccaacctcaaaga 16454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 260 - 375
Target Start/End: Original strand, 3629696 - 3629811
Alignment:
Q  260 taattacatcacaaatctttgctgatccatgtaaccttttctttcacaggcttttatttttaaaagacaaaattacattaatactcataacacaaactat 359  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3629696 taattacatcacaaatctttgctgatccatggaaccttttctttcacaggcttttatttttaaaagacaaaattacattaatactcataacacaaactat 3629795  T
Q  360 aaatcataagctatgc 375  Q
    ||||||||||||||||    
T  3629796 aaatcataagctatgc 3629811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3629439 - 3629519
Alignment:
Q  1 aaattagacttagggggtttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtaattaggtcgctatagg 82  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  3629439 aaattagacttagggg-tttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtagttaggtcactatagg 3629519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 3629576 - 3629631
Alignment:
Q  139 atggtatatgatagagcattattgcatcttttgattgatgtagccaacctcaaaga 194  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3629576 atggtatatgatagagcattattgcatcttttgatcgatgtagccaacctcaaaga 3629631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 11284189 - 11284237
Alignment:
Q  139 atggtatatgatagagcattattgcatcttttgattgatgtagccaacc 187  Q
    |||||||||||| || |||||||||||| ||||||  ||||||||||||    
T  11284189 atggtatatgattgaacattattgcatcgtttgatccatgtagccaacc 11284237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 12141745 - 12141793
Alignment:
Q  139 atggtatatgatagagcattattgcatcttttgattgatgtagccaacc 187  Q
    ||||||||||||||| |||||| ||||  |||||| |||||||||||||    
T  12141745 atggtatatgatagaacattatggcatgatttgatcgatgtagccaacc 12141793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University