View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13629_high_8 (Length: 277)

Name: NF13629_high_8
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13629_high_8
NF13629_high_8
[»] chr1 (2 HSPs)
chr1 (81-259)||(12215738-12215916)
chr1 (81-166)||(12215194-12215279)
[»] chr3 (3 HSPs)
chr3 (81-259)||(1636308-1636486)
chr3 (81-166)||(1636947-1637032)
chr3 (81-175)||(41827287-41827380)
[»] chr6 (2 HSPs)
chr6 (82-259)||(28007822-28008000)
chr6 (80-166)||(28008460-28008546)
[»] chr5 (1 HSPs)
chr5 (12-80)||(40923815-40923883)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 12215916 - 12215738
Alignment:
Q  81 gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaaa 180  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |    
T  12215916 gagttcagatctgctccagttccaacttgctccacttttcctgttcttttgacggatgagcgacacgtggcaaaaaaattaatcaaaggtgcagagaaca 12215817  T
Q  181 tgttctcattaacaccaaagcagttcgtatcagcaacttttgacgggttacattctatcgccgctgtgtatttgttcct 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12215816 tgttctcattaacaccaaagcagttcgtatcagcaacttttgacgggttacattctatcgccgctgtgtatttgttcct 12215738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 12215194 - 12215279
Alignment:
Q  81 gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaa 166  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12215194 gagttcagatttgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaattaatcaa 12215279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 81 - 259
Target Start/End: Original strand, 1636308 - 1636486
Alignment:
Q  81 gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaaa 180  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  1636308 gagttcagatctgctccagttccaacttactccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaca 1636407  T
Q  181 tgttctcattaacaccaaagcagttcgtatcagcaacttttgacgggttacattctatcgccgctgtgtatttgttcct 259  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1636408 tgttctcattaacaccaaagtagttcgtatcagcaacttttgacgggttacattctatcgtcgctgtgtatttgttcct 1636486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 1637032 - 1636947
Alignment:
Q  81 gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaa 166  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1637032 gagttcagatctgctctagttcaaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaattaatcaa 1636947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 41827287 - 41827380
Alignment:
Q  81 gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcaga 175  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||| ||||||  |||||||||||||| | |||||||| ||||| ||| ||||    
T  41827287 gagttcagatctgctccatttccaacttgccttagttttcctgttc-tttgacagatgagcgacacgtgtcgaaacaattcatcaacggttcaga 41827380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 28007822 - 28008000
Alignment:
Q  82 agttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaaat 181  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  28007822 agttcagatctgctccagttccaacttgctccagttttcatgttcttttgacggatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaacat 28007921  T
Q  182 gtt-ctcattaacaccaaagcagttcgtatcagcaacttttgacgggttacattctatcgccgctgtgtatttgttcct 259  Q
    ||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28007922 gttcctcattaacaccaaagcagttcatataagcaacttttgacgggttacattctatcgccgctgtgtatttgttcct 28008000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 28008546 - 28008460
Alignment:
Q  80 cgagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaa 166  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  28008546 cgagttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtgacaaaacaattaatcaa 28008460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 40923883 - 40923815
Alignment:
Q  12 agaagcaaaggatgatggtggggatgtatatttctaccaatcaacccatccttcaacagtcagggattc 80  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  40923883 agaaacaaaggatgatggtggggatgtagatttctaccgatcaacccatccttcaacagtcagggattc 40923815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University