View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13629_low_1 (Length: 592)

Name: NF13629_low_1
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13629_low_1
NF13629_low_1
[»] chr4 (7 HSPs)
chr4 (13-430)||(50677134-50677551)
chr4 (457-576)||(50677577-50677696)
chr4 (13-94)||(50681692-50681773)
chr4 (467-504)||(50675181-50675218)
chr4 (89-169)||(52468116-52468193)
chr4 (91-169)||(36118659-36118734)
chr4 (91-135)||(40217090-40217135)
[»] chr2 (4 HSPs)
chr2 (91-169)||(16227571-16227646)
chr2 (232-280)||(10252125-10252173)
chr2 (236-280)||(11913095-11913139)
chr2 (218-270)||(13800851-13800903)
[»] chr7 (5 HSPs)
chr7 (236-280)||(27237777-27237821)
chr7 (91-145)||(27237625-27237680)
chr7 (91-169)||(23020684-23020759)
chr7 (91-174)||(23858894-23858973)
chr7 (91-138)||(26917884-26917932)
[»] chr5 (3 HSPs)
chr5 (91-174)||(2024840-2024920)
chr5 (224-280)||(36869568-36869623)
chr5 (91-145)||(24395583-24395638)
[»] chr8 (2 HSPs)
chr8 (224-280)||(38009490-38009546)
chr8 (91-145)||(34048910-34048965)
[»] chr6 (1 HSPs)
chr6 (218-270)||(4036798-4036850)
[»] chr1 (1 HSPs)
chr1 (218-270)||(39135064-39135116)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 50677134 - 50677551
Alignment:
Q  13 aatatggtcaactgtttctgctttttaagatatctaggacagtagattggaattatcacgggcacgaattatgttgtgaaatcggggaagaagaaaagaa 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50677134 aatatggtcaactgtttctgctttttaagacatctaggacagtagattggaattatcacgggcacgaattatgttgtgaaatcggggaagaagaaaagaa 50677233  T
Q  113 agacagatggagtgatggtgatgaaatgcgtggatggtgtcagagagaaagagaatagggaaannnnnnnagtgtggtagtaccaaaggattataannnn 212  Q
    |||| |||||||||||||||||| |||||||||||||| |||||||||||||||||| | |||       ||||||||||||||| |||| |||||        
T  50677234 agaccgatggagtgatggtgatggaatgcgtggatggtatcagagagaaagagaataagaaaaaaaatttagtgtggtagtaccacaggactataatttt 50677333  T
Q  213 nnnncgaggcacatactttgggaaggcccaactccattgagctctttacacaccccaaaatccggcccagaaattaagaaaaacaatatagattttattt 312  Q
        |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  50677334 ttttcgaggcacatactttgggaaggcccaactccattgagctctttacacatcccaaaatccggccctgaaattaagaaaaacaatatagattttattt 50677433  T
Q  313 tgttaatatttaacacatctacatgtccttttctctaattttgcagacttatatatcagtaagaaatactactaaaagaagaaacaatgagtgaccagtg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50677434 tgttaatatttaacacatctacatgtccttttctctaattttgcagacttatatatcagtaagaaatactactaaaagaagaaacaatgagtgaccagtg 50677533  T
Q  413 aacctatgtttggattaa 430  Q
    ||||||||||||||||||    
T  50677534 aacctatgtttggattaa 50677551  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 457 - 576
Target Start/End: Original strand, 50677577 - 50677696
Alignment:
Q  457 catccctcttttctattaaatcctaacttgttacatccttttcttttgccactttctctgggtttataaatattccgatgagatttgtgatagcagtgtg 556  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50677577 catccctcttttctattaaatcctaacttgttacatcctttccttttgccactttctctgggtttataaatattccgatgagatttgtgatagcagtgtg 50677676  T
Q  557 ttagacactgtagcagtagg 576  Q
    ||||||||||||||||||||    
T  50677677 ttagacactgtagcagtagg 50677696  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 50681692 - 50681773
Alignment:
Q  13 aatatggtcaactgtttctgctttttaagatatctaggacagtagattggaattatcacgggcacgaattatgttgtgaaat 94  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  50681692 aatatggtcaactatttctgctttttaagacatctaggacagtaaattggaattatcacgggcacgaattatgttgtgaaat 50681773  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 50675181 - 50675218
Alignment:
Q  467 ttctattaaatcctaacttgttacatccttttcttttg 504  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  50675181 ttctattaattcctaacttgttacatccttttcttttg 50675218  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 52468193 - 52468116
Alignment:
Q  89 tgaaatcggggaagaagaaaag-aaagacagatggagtgatggtgatgaaatgcgtggatggtgtcagagagaaagagaata 169  Q
    |||||||||||||||| ||||| |||| | |||||||||||||||||| || |||    |||| ||||||||||||||||||    
T  52468193 tgaaatcggggaagaaaaaaaggaaagtctgatggagtgatggtgatggaacgcg----tggtatcagagagaaagagaata 52468116  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 36118659 - 36118734
Alignment:
Q  91 aaatcggggaagaagaaaa-gaaagacagatggagtgatggtgatgaaatgcgtggatggtgtcagagagaaagagaata 169  Q
    ||||||||||||||||||| ||||| | |||||||||||||| ||| || |||    |||| ||||||||||||||||||    
T  36118659 aaatcggggaagaagaaaaggaaagtccgatggagtgatggtaatggaaagcg----tggtatcagagagaaagagaata 36118734  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 40217135 - 40217090
Alignment:
Q  91 aaatcggggaagaagaaaa-gaaagacagatggagtgatggtgatg 135  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||    
T  40217135 aaatcggggaagaagaaaaggaaagtctgatggagtgatggtgatg 40217090  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 16227571 - 16227646
Alignment:
Q  91 aaatcggggaagaagaaaag-aaagacagatggagtgatggtgatgaaatgcgtggatggtgtcagagagaaagagaata 169  Q
    |||||||||||||||||||| |||| | ||||||||||||||||||||| |||    |||| ||||||||||||||||||    
T  16227571 aaatcggggaagaagaaaaggaaaggccgatggagtgatggtgatgaaacgcg----tggtatcagagagaaagagaata 16227646  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 10252173 - 10252125
Alignment:
Q  232 gggaaggcccaactccattgagctctttacacaccccaaaatccggccc 280  Q
    ||||||| |||||| | ||||||||||| |||||||||| |||||||||    
T  10252173 gggaaggtccaactacgttgagctctttgcacaccccaagatccggccc 10252125  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 11913095 - 11913139
Alignment:
Q  236 aggcccaactccattgagctctttacacaccccaaaatccggccc 280  Q
    ||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  11913095 aggcccaactccattgaactctttgcacaccccaaagtccagccc 11913139  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 13800851 - 13800903
Alignment:
Q  218 gaggcacatactttgggaaggcccaactccattgagctctttacacaccccaa 270  Q
    ||||| ||||| |||| ||| ||||||||||||||||| ||| ||||||||||    
T  13800851 gaggctcataccttggaaagacccaactccattgagctttttgcacaccccaa 13800903  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 27237777 - 27237821
Alignment:
Q  236 aggcccaactccattgagctctttacacaccccaaaatccggccc 280  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||    
T  27237777 aggcccaactccattgagctctttgcacaccccaaagtccggccc 27237821  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 27237625 - 27237680
Alignment:
Q  91 aaatcggggaagaagaaaa-gaaagacagatggagtgatggtgatgaaatgcgtgg 145  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||| || ||||||    
T  27237625 aaatcggggaagaagaaaaggaaagtccgatggagtgatggtgatggaacgcgtgg 27237680  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 23020684 - 23020759
Alignment:
Q  91 aaatcggggaagaagaaaa-gaaagacagatggagtgatggtgatgaaatgcgtggatggtgtcagagagaaagagaata 169  Q
    ||||||||||||||||||| ||||| | |||||| ||||||||||| || |||    |||| ||||||||||||||||||    
T  23020684 aaatcggggaagaagaaaaggaaagtccgatggaatgatggtgatggaacgcg----tggtatcagagagaaagagaata 23020759  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 23858973 - 23858894
Alignment:
Q  91 aaatcggggaagaagaaaagaaagacagatggagtgatggtgatgaaatgcgtggatggtgtcagagagaaagagaatagggaa 174  Q
    |||| ||||||||||||||| ||| | |||| ||||||||||||| || |||    |||| |||||||||||||||||| ||||    
T  23858973 aaattggggaagaagaaaaggaagtctgatgcagtgatggtgatggaacgcg----tggtatcagagagaaagagaataaggaa 23858894  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 26917884 - 26917932
Alignment:
Q  91 aaatcggggaagaagaaaag-aaagacagatggagtgatggtgatgaaa 138  Q
    ||||||||||||| |||||| |||| | |||||||||||||||||||||    
T  26917884 aaatcggggaagatgaaaagtaaagtctgatggagtgatggtgatgaaa 26917932  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 2024840 - 2024920
Alignment:
Q  91 aaatcggggaagaagaaaag-aaagacagatggagtgatggtgatgaaatgcgtggatggtgtcagagagaaagagaatagggaa 174  Q
    |||||||||||||||||||| |||| |||||||||||||||||||| || |||     ||| |||||||||||||||||| ||||    
T  2024840 aaatcggggaagaagaaaaggaaagtcagatggagtgatggtgatggaacgcg----cggtatcagagagaaagagaataaggaa 2024920  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 36869568 - 36869623
Alignment:
Q  224 catactttgggaaggcccaactccattgagctctttacacaccccaaaatccggccc 280  Q
    ||||| |||||||| ||||||||||||||||||||| ||| ||||||| ||||||||    
T  36869568 cataccttgggaagtcccaactccattgagctctttgcac-ccccaaagtccggccc 36869623  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 24395638 - 24395583
Alignment:
Q  91 aaatcggggaagaagaaaag-aaagacagatggagtgatggtgatgaaatgcgtgg 145  Q
    |||||||||||||||||||| |||| | |||||||||||||||||| |||| ||||    
T  24395638 aaatcggggaagaagaaaaggaaagtctgatggagtgatggtgatggaatgtgtgg 24395583  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 38009490 - 38009546
Alignment:
Q  224 catactttgggaaggcccaactccattgagctctttacacaccccaaaatccggccc 280  Q
    ||||| ||||| |||| || |||||||||||||||||||||||||||  ||||||||    
T  38009490 cataccttggggaggctcagctccattgagctctttacacaccccaaggtccggccc 38009546  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 34048910 - 34048965
Alignment:
Q  91 aaatcggggaagaagaaaa-gaaagacagatggagtgatggtgatgaaatgcgtgg 145  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||| || ||||||    
T  34048910 aaatcggggaagaagaaaaggaaagtccgatggagtgatggtgatggaacgcgtgg 34048965  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 4036850 - 4036798
Alignment:
Q  218 gaggcacatactttgggaaggcccaactccattgagctctttacacaccccaa 270  Q
    ||||| ||||| ||||| |||||||||||||||||||  ||| ||||||||||    
T  4036850 gaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaa 4036798  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 39135064 - 39135116
Alignment:
Q  218 gaggcacatactttgggaaggcccaactccattgagctctttacacaccccaa 270  Q
    ||||| ||||| ||||| |||||||  ||||||||||||||| ||||||||||    
T  39135064 gaggcccataccttggggaggcccagttccattgagctctttgcacaccccaa 39135116  T

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