View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13629_low_15 (Length: 227)
Name: NF13629_low_15
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13629_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 7279256 - 7279479
Alignment:
| Q |
1 |
cagcagcaggcctgatgtactcttcctcctcctttggagtgtgaatagtgacaatatcaggtaggggagttttaggaccctgctttcctttaggatccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7279256 |
cagcagcaggcctgatgtactcttcctcctcctttggagtgtgaatagtgacaatatcaggtaggggagttttaggaccctgctttcctttaggatccca |
7279355 |
T |
|
| Q |
101 |
gtcaagcataatcttcaccttaattccaagaacaccctacaacataaacatcataatcatcattagcaacataaataaatccataacaaaccaaacc--- |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7279356 |
gtcaagcataatcttcaccttaattccaagaacaccctacaacataaacatcataatcatcattagcaacataaataaatctataacaaaccaaaccaac |
7279455 |
T |
|
| Q |
198 |
--aacaaggttgttagatgataaa |
219 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
7279456 |
aaaacaaggttgttagatgataaa |
7279479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 16865925 - 16865777
Alignment:
| Q |
1 |
cagcagcaggcctgatgtactcttcctcctcctttggagtgtgaatagtgacaatatcaggtaggggagttttaggaccctgctttcctttaggatccca |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
16865925 |
cagcagcaggcctgatgtactcctcctcttcctttggagtgtgaatggtgacaatatcagggaggggagttttagggccctgctttcctttaggatccca |
16865826 |
T |
|
| Q |
101 |
gtcaagcataatcttcaccttaattccaagaacaccctacaacataaac |
149 |
Q |
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||| ||||| |||||||||||||| || |||||||||||||||| |||| |
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| T |
16865825 |
gtcgagcatgatcttcaccttaatgccgagaacaccctacaacacaaac |
16865777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 50355794 - 50355912
Alignment:
| Q |
24 |
tcctcctcctttggagtgtgaatagtgacaatatcaggtaggggagttttaggaccctgctttcctttaggatcccagtcaagcataatcttcaccttaa |
123 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||||||||| |||||||| |||||||| || | |
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| T |
50355794 |
tcctcctcctttggagtgtggatagtgacaatatcagggaggggagttttaggaccttgtttccctttaggatcccaatcaagcatgatcttcactttga |
50355893 |
T |
|
| Q |
124 |
ttccaagaacaccctacaa |
142 |
Q |
| |
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| ||||||||||||||||| |
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| T |
50355894 |
taccaagaacaccctacaa |
50355912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 18174060 - 18174282
Alignment:
| Q |
1 |
cagcagcaggcctgatgtactcttcctcctcctttggagtgtgaatagtgacaatatcaggtaggggagttttaggaccctgctttcctttaggatccca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
18174060 |
cagcagcaggcctggtgtactcttcctcatcctttggagtgtgaattgtaacaatatcaggtagaggagttttaggaccttgctttcctttaggatccca |
18174159 |
T |
|
| Q |
101 |
gtcaagcataatcttcaccttaattccaagaacaccctacaacataaacatc----ataatcatcattagcaacataaataaatccataacaaaccaaac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
18174160 |
gtcaagcataatcttcaccttaattccaagaacaccctacaacataaatgtcatatatagtcatcattagcaacataaataaatacataacaaaccaaac |
18174259 |
T |
|
| Q |
197 |
caacaaggttgttagatgataaa |
219 |
Q |
| |
|
||| |||||| |||||||||||| |
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|
| T |
18174260 |
caataaggtttttagatgataaa |
18174282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 18225741 - 18225519
Alignment:
| Q |
1 |
cagcagcaggcctgatgtactcttcctcctcctttggagtgtgaatagtgacaatatcaggtaggggagttttaggaccctgctttcctttaggatccca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
18225741 |
cagcagcaggcctggtgtactcttcctcatcctttggagtgtgaattgtaacaatatcaggtagaggagttttaggaccttgctttcctttaggatccca |
18225642 |
T |
|
| Q |
101 |
gtcaagcataatcttcaccttaattccaagaacaccctacaacataaacatc----ataatcatcattagcaacataaataaatccataacaaaccaaac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
18225641 |
gtcaagcataatcttcaccttaattccaagaacaccctacaacataaatgtcatatatagtcatcattagcaacataaataaatacataacaaaccaaac |
18225542 |
T |
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| Q |
197 |
caacaaggttgttagatgataaa |
219 |
Q |
| |
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||| |||||| |||||||||||| |
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| T |
18225541 |
caataaggtttttagatgataaa |
18225519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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