View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13629_low_16 (Length: 217)
Name: NF13629_low_16
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13629_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 44376831 - 44376646
Alignment:
| Q |
16 |
accactacataaacaacagtaaggcccttcgtgaagccatgtgtttcatgatggatcctacatcagggnnnnnnntatgctatgtgcaatttcctcaaag |
115 |
Q |
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| T |
44376831 |
accactacataaacaacagtaaggcccttcgtgaagccatgtgtttcatgatggatcctacatcagggaaaaaaatatgctatgtgcaatttcctcaaag |
44376732 |
T |
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| Q |
116 |
atttgatggaattgatcgtcatgatagatactcaaatcgtaatgttgtattctttgatgtgagtaagaatttattgttgacttatg |
201 |
Q |
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| T |
44376731 |
atttgatggaattgatcgtcatgatagatactcaaatcgtaatgttgtattctttgatgtgagtaagaatttattgttgacttatg |
44376646 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 38720061 - 38719979
Alignment:
| Q |
93 |
tgctatgtgcaatttcctcaaagatttgatggaattgatcgtcatgatagatactcaaatcgtaatgttgtattctttgatgt |
175 |
Q |
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| T |
38720061 |
tgctatgtacaatttccacaaagatttgatggaattgatagacatgacagatactccaacagaaatgttgtattttttgatgt |
38719979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 15172142 - 15172194
Alignment:
| Q |
93 |
tgctatgtgcaatttcctcaaagatttgatggaattgatcgtcatgatagata |
145 |
Q |
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| T |
15172142 |
tgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatagata |
15172194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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