View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13629_low_2 (Length: 508)
Name: NF13629_low_2
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13629_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 29336899 - 29337267
Alignment:
| Q |
1 |
gtttagagagcaaaatatagtttggtggtggtgcaaaactagagcatgaatgagatgatgaaaatctagtgattataagttctaaattacctagaaacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
29336899 |
gtttagagagcaaaatatagtttggtgcgggtgcaaaactagagcatgaatgagatgatgaaaatctagtgattataaagagtg--ttacctagaaacca |
29336996 |
T |
|
| Q |
101 |
agaaagaacacaatcagaagtttagaacaggttgaaaataaagagtgttacataccctctcttaagtt-caagttcaaactgatggttgcttgcttctga |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29336997 |
agaaagaacacagtcagaagtttagaacaggttgaaaataaagagtgttacataccctctcttaagtttcaagttcaaactgatggttgcttgcttctga |
29337096 |
T |
|
| Q |
200 |
gatcaactataaactgctttggaaattggagacatgtttttccattgtttcttctttggaatggttggttatgagaagacaaaagaagcttgtgtgtcct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29337097 |
gatcaactataaactgctttggaaattggagacatgtttttccattgtttcttctttggaatggttggttatgagaagacaaaagaagcttgtgtgtcct |
29337196 |
T |
|
| Q |
300 |
tttatttatgttcttaaagcactaatagagggtaa----aatgaaagctagtactagttctttatgttcta |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29337197 |
tttatttatgttcttaaagcactaatagagggtaaaattaatgaaagctagtactagttctttatgttcta |
29337267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 437 - 498
Target Start/End: Original strand, 29337338 - 29337399
Alignment:
| Q |
437 |
gagagacagtaggatggtgggcattgatgtttatttatgggaaagcaaaggtaagatgatgt |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29337338 |
gagagacagtaggatggtgggcattgatgtttatttatgggaaagcaaaggtaagatgatgt |
29337399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University