View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13629_low_5 (Length: 379)
Name: NF13629_low_5
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13629_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 42729745 - 42729420
Alignment:
| Q |
13 |
aatattaagtagctattcatacatatatacttctaatttgagttaatgcataagtgtttgaatcatgaatgatgaatgagaaaataccaaggtaacaact |
112 |
Q |
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| T |
42729745 |
aatattaagtagctattcatacatatatacttctaatttgagttaatgcataagtgtttgaatcatg----atgaatgagaaaaaa-------------- |
42729664 |
T |
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| Q |
113 |
aataatatactaacgtttctctcttnnnnnnntaatatatacttaggatctcataatctaacat-atatattataatactgattgatcaggagttccatg |
211 |
Q |
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| T |
42729663 |
-------tactaacgtttctctcttaaaaaaataatatatacttaggatctcataatctaacattatatattataataatgattgatcaggagttccatg |
42729571 |
T |
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| Q |
212 |
gacagaagaagagcacagaatgtttcttgttggattagagaagctaggaaaaggagactggagaggaatctctaaaaactttgtcacttcaagaactcct |
311 |
Q |
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| T |
42729570 |
gacagaagaagagcacagaatgttccttgttggattagagaagctaggaaaaggagactggagaggaatctctaaaaactttgtcacttcaagaactcct |
42729471 |
T |
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| Q |
312 |
acacaagttgctagccatgctcaaaaatactttctcagattggctactatc |
362 |
Q |
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| T |
42729470 |
acacaagttgctagccatgctcaaaaatactttctcagattggctactatc |
42729420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 337
Target Start/End: Original strand, 34848386 - 34848523
Alignment:
| Q |
200 |
aggagttccatggacagaagaagagcacagaatgtttcttgttggattagagaagctaggaaaaggagactggagaggaatctctaaaaactttgtcact |
299 |
Q |
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| T |
34848386 |
aggagttccatggacagaagaagagcatagaaaattccttgttggacttgagaagcttggaaaaggagattggaggggtatctctagaaactatgtgact |
34848485 |
T |
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| Q |
300 |
tcaagaactcctacacaagttgctagccatgctcaaaa |
337 |
Q |
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| T |
34848486 |
acaagaacaccaacacaagttgcaagccatgctcaaaa |
34848523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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