View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13629_low_6 (Length: 331)
Name: NF13629_low_6
Description: NF13629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13629_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 31714764 - 31714907
Alignment:
| Q |
8 |
agaaatgaagccggattatgcagcaccaagcatagctaccccttatgttagttagagatgaagttacacttatatcttaaaaggtattctatttcattat |
107 |
Q |
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| T |
31714764 |
agaactgaagccggattatgcagcaccaagcatagctaccccttatgttag----agataaagttacacttatatcttaaa-ggtattctatttcattat |
31714858 |
T |
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| Q |
108 |
tcatatttcagattcagaaatagcattaatcttccccatcaaacacctg |
156 |
Q |
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| T |
31714859 |
tcatatttcagattcagaaatagcattaatcttccccatcaaacacctg |
31714907 |
T |
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Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 213 - 316
Target Start/End: Original strand, 31714964 - 31715056
Alignment:
| Q |
213 |
ctcttaatcaagcaagaaatgtgaagagtcttattatcaattacaaaagcacaccaatgtgtgttagactttgaaatccaatgggcagatgttgttgttg |
312 |
Q |
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| T |
31714964 |
ctcttaatcaagcaagaaatgtgaagagtcttattatcaattacaaaagcac-----------ttagactttgaaatccaatgggcagacgttgttgttg |
31715052 |
T |
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