View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_high_11 (Length: 537)

Name: NF1362_high_11
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_high_11
NF1362_high_11
[»] chr1 (7 HSPs)
chr1 (30-301)||(31029561-31029832)
chr1 (30-301)||(31036531-31036802)
chr1 (405-525)||(31036889-31037009)
chr1 (30-301)||(31026726-31026979)
chr1 (30-111)||(31041728-31041809)
chr1 (223-301)||(31041908-31041987)
chr1 (448-510)||(31033900-31033961)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 31029561 - 31029832
Alignment:
Q  30 taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31029561 taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc 31029660  T
Q  130 tttgcttgagatttgaagatgtgaatggtatgttttgaaacaagcaaac--nnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttg 227  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||                     ||| ||||||||||||| |||  |||||||    
T  31029661 tttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatatagtgactccatgcatgaagaacgagtttttg 31029760  T
Q  228 aaattcgtttagcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac 301  Q
    |||||||||||||||||||| ||| |  |||||||||||||||||||||| |||||||||||||||||||||||    
T  31029761 aaattcgtttagcttgactaattgca--attcttatggtttgaacttgaaagttgacaattgaacgaatcaaac 31029832  T

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Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 31036531 - 31036802
Alignment:
Q  30 taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31036531 taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc 31036630  T
Q  130 tttgcttgagatttgaagatgtgaatggtatgttttgaaacaagcaaac--nnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttg 227  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||                     ||| ||||||||||||| |||  |||||||    
T  31036631 tttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatatagtgactccatgcatgaagaacgagtttttg 31036730  T
Q  228 aaattcgtttagcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac 301  Q
    |||||||||||||||||||| ||| |  |||||||||||||||||||||| |||||||||||||||||||||||    
T  31036731 aaattcgtttagcttgactaattgca--attcttatggtttgaacttgaaagttgacaattgaacgaatcaaac 31036802  T

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Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 405 - 525
Target Start/End: Original strand, 31036889 - 31037009
Alignment:
Q  405 accgttgattatccattttaatactccaaacaggcacggtgacaatttatttattttgcattcatttagtcctgtgtctcaaaatcggctaaatggagac 504  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31036889 accgtggattatccattttaatactccaaacaggcacggtgacaatttatttattttgcattcatttagtcctgtgtctcaaaatcggctaaatggagac 31036988  T
Q  505 ccattctatttaccggagtat 525  Q
    |||||||||||||||||||||    
T  31036989 ccattctatttaccggagtat 31037009  T

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Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 31026726 - 31026979
Alignment:
Q  30 taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||                  |||||||||    
T  31026726 taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttatt------------------acaagtttc 31026807  T
Q  130 tttgcttgagatttgaagatgtgaatggtatgttttgaaacaagcaaacnnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttgaa 229  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||                   ||| |||||||||||||  ||  |||||||||    
T  31026808 tttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatagtgactccatgcatgaagtacgagtttttgaa 31026907  T
Q  230 attcgtttagcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac 301  Q
    |||||||||| |||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31026908 attcgtttagtttgactaactgtaatattcttatggtttgaacttgaaagttgacaattgaacgaatcaaac 31026979  T

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Target: chr1; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 31041728 - 31041809
Alignment:
Q  30 taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  31041728 taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaatttccttctagttttgtgccttattgataatatc 31041809  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 31041908 - 31041987
Alignment:
Q  223 ttttgaaattcgtttagcttgactacttgtaatattcttatggtttgaacttg--aatgttgacaattgaacgaatcaaac 301  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||||||||  || |||||| ||||||||||||||||    
T  31041908 ttttgaaattcgttgagcttgactaattgtaat-ttcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaac 31041987  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 510
Target Start/End: Original strand, 31033900 - 31033961
Alignment:
Q  448 aatttatttattttg-cattcatttagtcctgtgtctcaaaatcggctaaatggagacccattc 510  Q
    ||||||||||||||| ||||||||||| |  |||||||||||| || |||||||||||||||||    
T  31033900 aatttatttattttgacattcatttagcc--gtgtctcaaaattggataaatggagacccattc 31033961  T

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