View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_high_13 (Length: 535)
Name: NF1362_high_13
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 30 - 529
Target Start/End: Original strand, 31036531 - 31037015
Alignment:
| Q |
30 |
taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036531 |
taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc |
31036630 |
T |
|
| Q |
130 |
tttgcttgagatttgaagatgtgaatggtatgttttgaaacaagcaaac--nnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttg |
227 |
Q |
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| T |
31036631 |
tttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatatagtgactccatgcatgaagaacgagtttttg |
31036730 |
T |
|
| Q |
228 |
aaattcgtttagcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaacaaacttcctgcatgcgcaccaaacta |
327 |
Q |
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| T |
31036731 |
aaattcgtttagcttgactaattgca--attcttatggtttgaacttgaaagttgacaattgaacgaatcaaa--------cttcttgtgcaccaaacta |
31036820 |
T |
|
| Q |
328 |
tatacacgaaaacaagtattatgagatatatttatttgttgatatgtatacccccatatatatannnnnnnnnnnaccgttgattatccattttaatact |
427 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||| |
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| T |
31036821 |
tacacacgaaaacaagtattatgagatatatttatttgttgatatgtata--cccatattt-----tctttttttaccgtggattatccattttaatact |
31036913 |
T |
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| Q |
428 |
ccaaacaggcacggtgacaatttatttattttgcattcatttagtcctgtgtctcaaaatcggctaaatggagacccattctatttaccggagtattatc |
527 |
Q |
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| T |
31036914 |
ccaaacaggcacggtgacaatttatttattttgcattcatttagtcctgtgtctcaaaatcggctaaatggagacccattctatttaccggagtattttc |
31037013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 31029561 - 31029832
Alignment:
| Q |
30 |
taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31029561 |
taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc |
31029660 |
T |
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| Q |
130 |
tttgcttgagatttgaagatgtgaatggtatgttttgaaacaagcaaac--nnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttg |
227 |
Q |
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| T |
31029661 |
tttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatatagtgactccatgcatgaagaacgagtttttg |
31029760 |
T |
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| Q |
228 |
aaattcgtttagcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac |
301 |
Q |
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| T |
31029761 |
aaattcgtttagcttgactaattgca--attcttatggtttgaacttgaaagttgacaattgaacgaatcaaac |
31029832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 31026726 - 31026979
Alignment:
| Q |
30 |
taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
31026726 |
taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttatt------------------acaagtttc |
31026807 |
T |
|
| Q |
130 |
tttgcttgagatttgaagatgtgaatggtatgttttgaaacaagcaaacnnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttgaa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| || ||||||||| |
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| T |
31026808 |
tttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatagtgactccatgcatgaagtacgagtttttgaa |
31026907 |
T |
|
| Q |
230 |
attcgtttagcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac |
301 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31026908 |
attcgtttagtttgactaactgtaatattcttatggtttgaacttgaaagttgacaattgaacgaatcaaac |
31026979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 31041728 - 31041809
Alignment:
| Q |
30 |
taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
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| T |
31041728 |
taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaatttccttctagttttgtgccttattgataatatc |
31041809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 31041908 - 31041987
Alignment:
| Q |
223 |
ttttgaaattcgtttagcttgactacttgtaatattcttatggtttgaacttg--aatgttgacaattgaacgaatcaaac |
301 |
Q |
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| T |
31041908 |
ttttgaaattcgttgagcttgactaattgtaat-ttcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaac |
31041987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 529
Target Start/End: Original strand, 31033900 - 31033982
Alignment:
| Q |
446 |
aatttatttattttg-cattcatttagtcctgtgtctcaaaatcggctaaatggagacccattctatttaccggagtattatcta |
529 |
Q |
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||||||||||||||| ||||||||||| | |||||||||||| || ||||||||||||||||| | | | ||||||||| |||| |
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| T |
31033900 |
aatttatttattttgacattcatttagcc--gtgtctcaaaattggataaatggagacccattcaagtcatcggagtattttcta |
31033982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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