View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_high_16 (Length: 515)
Name: NF1362_high_16
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_high_16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 30 - 515
Target Start/End: Complemental strand, 11613417 - 11612922
Alignment:
| Q |
30 |
ctatatctgtgacatgtaaaatcaatgacaaaggaacaaatgcacaagtcagaaaaccatgaaatcaatgaaatccaatatgcaggcacaaacaagagtg |
129 |
Q |
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| T |
11613417 |
ctatctctgtgacatgtaaaatcaatgacaaaggaacaaatgcacaagtcagaaaaccatgaaatcaatgaaatccaatatgcaggcacaaacaagagtg |
11613318 |
T |
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| Q |
130 |
tcaagaagtgcttaaaatttaaccatataatcaatgacagcagtttgataaaattagccacaaatcgtacaaataaaaactgaaaagatagaacaaataa |
229 |
Q |
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| T |
11613317 |
tcaagaagtgcttaaaatttaaccatataatcaatgacagcagtttgataaaattagccacaaatcgtacaaataaaaactgaaaagatagaacaaataa |
11613218 |
T |
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| Q |
230 |
agtatctcaacaatggtaaccgtactctactgatttttgttttgttttaaccatatggttctcagaaagaa----------aaaaggggttctggtaatc |
319 |
Q |
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| T |
11613217 |
agtttctcaacaatggtaatcgtactctactgatttttgttttgttttaaccatatagttctcagaaagaaaaaaaaaaaaaaaaggggttctggtaatc |
11613118 |
T |
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| Q |
320 |
caaagttcggccagaaggtaagcaaagtctagccaaagattgtttaagtcagggatcgaactcaagtactcctcattgatccgaccgtaacttaaactca |
419 |
Q |
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| T |
11613117 |
caaagttcggccagaaggtaagcaaagtctagccaaagattgtttaagtcagggatcgaactcaagtactcctcattaatccgaccgtaacttaaactca |
11613018 |
T |
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| Q |
420 |
tcaaccacttggttatgctctactcaattatacatatgaatgtttgacatctacatctaaatgtgaagagcaagcaaaggaaaaagaaaaggacct |
515 |
Q |
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| T |
11613017 |
tcaaccacttggttatgctctactcaattatacatatgaatgtttgacatctacatctaaatgtgaagagcaagcaaaggaaaaagaaaaggacct |
11612922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 39085132 - 39085196
Alignment:
| Q |
305 |
ggggttctggtaatccaaagttcggccagaaggtaagcaaagtctagccaaagattgtttaagtc |
369 |
Q |
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| T |
39085132 |
gggggtctggtaatccaaagttcggttaggaggtaagtgaagtcttgccaatgattgttcaagtc |
39085196 |
T |
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