View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_high_20 (Length: 471)

Name: NF1362_high_20
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_high_20
NF1362_high_20
[»] chr3 (6 HSPs)
chr3 (37-443)||(34527561-34527965)
chr3 (348-412)||(27633799-27633863)
chr3 (348-412)||(34518617-34518681)
chr3 (71-148)||(27627524-27627601)
chr3 (71-148)||(34513313-34513390)
chr3 (203-252)||(27633921-27633970)
[»] chr6 (4 HSPs)
chr6 (59-148)||(24486465-24486555)
chr6 (55-148)||(24468193-24468286)
chr6 (59-148)||(24485746-24485835)
chr6 (59-148)||(24472504-24472595)
[»] chr2 (4 HSPs)
chr2 (55-148)||(10527955-10528048)
chr2 (37-136)||(10534867-10534969)
chr2 (360-427)||(10534541-10534609)
chr2 (358-427)||(10527634-10527704)
[»] scaffold1215 (2 HSPs)
scaffold1215 (37-136)||(2055-2157)
scaffold1215 (360-427)||(1729-1797)
[»] chr1 (1 HSPs)
chr1 (99-144)||(21991125-21991170)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 37 - 443
Target Start/End: Complemental strand, 34527965 - 34527561
Alignment:
Q  37 agaggaaaacaacttgagttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttct 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34527965 agaggaaaacaacttgagttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcacttcaatgaatcttgaactttct 34527866  T
Q  137 aatatcaatgaagaagacatgaggattctaagaagggtcagaattacaagtccaccaaatatttgtatgacgaatgaggttgacgatcacagtatttctg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34527865 aatatcaatgaagaagacatgaggattctaagaagggtcagaattacaagtccaccaaatatttgtatgacgaatgaggttgatgatcacagtatttctg 34527766  T
Q  237 gagatgagaaaggttgnnnnnnnnnnaatttgattttaataatctttctttatgtgtgtgaacctgttctttctctatgttggtaccttagaaatgaagt 336  Q
    ||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34527765 gagatgagaaaggttg--ttttttttaatttgattttaataatctttctttatgtgtgtgaacctgttctttctgtatgttggtaccttagaaatgaagt 34527668  T
Q  337 taggttctctctgatatatcaattttattcttcttggatgtattttattgaatagattgattatatgtcaagtctttaacttagctcaggaaaattttgt 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  34527667 taggttctctctgatatatcaattttattcttcttggatgtattttattgaagagattgattatatgtcaagtcttaaacttagctcaggaaaattttgt 34527568  T
Q  437 tcttaat 443  Q
    |||||||    
T  34527567 tcttaat 34527561  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 27633863 - 27633799
Alignment:
Q  348 tgatatatcaattttattcttcttggatgtattttattgaatagattgattatatgtcaagtctt 412  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27633863 tgatatatcaattttgttcttcttggatgtattttatagaatagattgattatatgtcaagtctt 27633799  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 34518681 - 34518617
Alignment:
Q  348 tgatatatcaattttattcttcttggatgtattttattgaatagattgattatatgtcaagtctt 412  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34518681 tgatatatcaattttgttcttcttggatgtattttatagaatagattgattatatgtcaagtctt 34518617  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 27627601 - 27627524
Alignment:
Q  71 cctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 148  Q
    ||||||| ||||||  |||||||||| | |||||| ||||| |||||||||||||||||||| ||| || ||||||||    
T  27627601 cctactgtggtgccacaagattcttcagattttgaaaatttggcttcaatgaatcttgaactatctgatttcaatgaa 27627524  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 34513390 - 34513313
Alignment:
Q  71 cctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 148  Q
    ||||||| ||||||  |||||||||| | |||||| ||||| |||||||||||||||||||| ||| || ||||||||    
T  34513390 cctactgtggtgccacaagattcttcagattttgaaaatttggcttcaatgaatcttgaactatctgatttcaatgaa 34513313  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 27633970 - 27633921
Alignment:
Q  203 atgacgaatgaggttgacgatcacagtatttctggagatgagaaaggttg 252  Q
    |||| ||||||||||||||||||||||||||| |  ||||||||||||||    
T  27633970 atgatgaatgaggttgacgatcacagtatttcggtggatgagaaaggttg 27633921  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 24486465 - 24486555
Alignment:
Q  59 tcttcaacaacacctactgaggtgcctgaagattcttctgtttttg-acaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 148  Q
    ||||||||||||||||||||| ||||  ||| |||||||||||||| |||||||  |||||||||| |||||||||||| |||||||||||    
T  24486465 tcttcaacaacacctactgagatgccacaaggttcttctgtttttgtacaatttttcttcaatgaagcttgaactttctgatatcaatgaa 24486555  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 24468193 - 24468286
Alignment:
Q  55 ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 148  Q
    |||||||| |||||||| ||||||| |||   ||| |||||| |||||| ||||||| || |||||||| |||||||||| | |||||||||||    
T  24468193 ttcatcttaaacaacacttactgagatgcaacaaggttcttccgttttttacaattttgcgtcaatgaagcttgaactttatgatatcaatgaa 24468286  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 24485746 - 24485835
Alignment:
Q  59 tcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 148  Q
    |||||||||||||||||| || ||||  |||  | ||| |||||| ||| ||| ||||||||||| |||||||||||| |||||||||||    
T  24485746 tcttcaacaacacctactaagatgccacaaggcttttccgttttttacagttttgcttcaatgaagcttgaactttctgatatcaatgaa 24485835  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 24472504 - 24472595
Alignment:
Q  59 tcttcaacaacacctactgaggtgcctgaagattcttctgtt--tttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 148  Q
    ||||||||||||||||||||| ||||  ||| || ||| |||  ||| ||  |||  |||||||||| ||||||||||||||||||||||||    
T  24472504 tcttcaacaacacctactgagatgccccaaggtttttccgttctttttacggtttttcttcaatgaagcttgaactttctaatatcaatgaa 24472595  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 10528048 - 10527955
Alignment:
Q  55 ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactttctaatatcaatgaa 148  Q
    ||||||| || |||||||||||||||||||  ||| ||||||||||||||||||||| | ||| ||||| ||| |||||||| ||||| |||||    
T  10528048 ttcatctccagcaacacctactgaggtgccccaaggttcttctgtttttgacaattttgattcgatgaagcttaaactttctgatatctatgaa 10527955  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 10534969 - 10534867
Alignment:
Q  37 agaggaaaacaacttgag---ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactt 133  Q
    ||||||||||||| ||||   ||||||| || ||||||||||||||||| |  ||| ||||||||||||| ||||||| | ||| ||||| ||| |||||    
T  10534969 agaggaaaacaacatgagctcttcatctccaccaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaactt 10534870  T
Q  134 tct 136  Q
    |||    
T  10534869 tct 10534867  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 10534609 - 10534541
Alignment:
Q  360 tttattcttcttggatgtattttattgaatagatt-gattatatgtcaagtctttaacttagctcagga 427  Q
    |||||| | ||||||||||||||  | |||||||| ||| ||||||||||||||||| |||||||||||    
T  10534609 tttattgtgcttggatgtattttgctaaatagatttgatcatatgtcaagtctttaatttagctcagga 10534541  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 427
Target Start/End: Complemental strand, 10527704 - 10527634
Alignment:
Q  358 attttattcttcttggatgtattttattgaatagatt-gattatatgtcaagtctttaacttagctcagga 427  Q
    |||||||| | |||| |||||||||  |||||||||| ||| ||| ||||||||||||| |||||||||||    
T  10527704 attttattgtgcttgtatgtattttgctgaatagatttgatcatacgtcaagtctttaatttagctcagga 10527634  T

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Target: scaffold1215 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 2157 - 2055
Alignment:
Q  37 agaggaaaacaacttgag---ttcatcttcaacaacacctactgaggtgcctgaagattcttctgtttttgacaatttcgcttcaatgaatcttgaactt 133  Q
    ||||||||||||| ||||   ||||||| || ||||||||||||||||| |  ||| ||||||||||||| ||||||| | ||| ||||| ||| |||||    
T  2157 agaggaaaacaacatgagctcttcatctccaccaacacctactgaggtgacacaaggttcttctgtttttaacaattttgattcgatgaagcttaaactt 2058  T
Q  134 tct 136  Q
    |||    
T  2057 tct 2055  T

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Target: scaffold1215; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 1797 - 1729
Alignment:
Q  360 tttattcttcttggatgtattttattgaatagatt-gattatatgtcaagtctttaacttagctcagga 427  Q
    |||||| | ||||||||||||||  | |||||||| ||| ||||||||||||||||| |||||||||||    
T  1797 tttattgtgcttggatgtattttgctaaatagatttgatcatatgtcaagtctttaatttagctcagga 1729  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 21991170 - 21991125
Alignment:
Q  99 tttttgacaatttcgcttcaatgaatcttgaactttctaatatcaa 144  Q
    ||||||||||| |  |||||||||||||||| ||||||||||||||    
T  21991170 tttttgacaatctgtcttcaatgaatcttgagctttctaatatcaa 21991125  T

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