View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_high_22 (Length: 455)
Name: NF1362_high_22
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 71 - 401
Target Start/End: Original strand, 50784033 - 50784363
Alignment:
| Q |
71 |
ttagttctgcacaacgtcgctgtctgcaccatgcaagacaacttgtcagaccacacacactttttatcacaaaaaacaaattaatactatcatagcatct |
170 |
Q |
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| T |
50784033 |
ttagttctgcacaacgtcgctgtctgcaccatgcaagacaacttgtcagaccacacacactttttatcacaaaaaacaaattaatactatcatagcatct |
50784132 |
T |
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| Q |
171 |
ttcattcatatatctcctaatataagtttcatttcaaatatactctctagatataagtctcgttttaaaccaatggatgattgatacatattatttcnnn |
270 |
Q |
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| T |
50784133 |
ttcattcacatatctcctaatataagtttcatttcaaatatactctctagatataagtctcgttttaaaccaatggatgatggatacatattatttcaaa |
50784232 |
T |
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| Q |
271 |
nnnntattaataatactaatttagtttagaagatgaaaacttaaatttagacgcatcaatatataaaagagtatttacaaaagagattaatgttattgta |
370 |
Q |
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| T |
50784233 |
aaaatattaataatattaatttagtttagaagatgaaaacttaaatttagacgcatcaatatataaaagagtatttacaaaagagattaatgttattgta |
50784332 |
T |
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| Q |
371 |
aaactattttacaggtatatgtgatataatt |
401 |
Q |
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| T |
50784333 |
aaactattttacaggtatatgtgatataatt |
50784363 |
T |
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