View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_high_25 (Length: 431)
Name: NF1362_high_25
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 65 - 416
Target Start/End: Original strand, 8738483 - 8738832
Alignment:
| Q |
65 |
ctctcattcttgattttcttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttc |
164 |
Q |
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| T |
8738483 |
ctctcattcttgattttcttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttc |
8738582 |
T |
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| Q |
165 |
cgatgttaacaatgtcatagcagaagttgatgtttgcaggtttgagccttgggaattaccatgtatgtnnnnnnnnncaaacctcgtctttattttcttt |
264 |
Q |
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| T |
8738583 |
ccatgttaacaatgtcatagcagaagttgatgtttgcaggtttgagccttgggaattaccatgtatgtaaaaaaa--caaacctcgtctttattttcttt |
8738680 |
T |
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| Q |
265 |
gcaaacctagtaattattttcttataattttctttttgatataatccttctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttct |
364 |
Q |
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| T |
8738681 |
gcaaacctagtaattattttcttataattttctttttgatataatccttctttgtcagctcgttcgataataaaatcacatgacccggaatggtttttct |
8738780 |
T |
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| Q |
365 |
tgtgtccttgtgattataagtacgcaaagagtaaaaagtttaaccgagcaac |
416 |
Q |
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| T |
8738781 |
tgtgtccttgtgattacaagtacgcaaagagtaaaaagtttaaccgagcaac |
8738832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 8690720 - 8690862
Alignment:
| Q |
83 |
ttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttccgatgttaacaatgtcat |
182 |
Q |
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| T |
8690720 |
ttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgtcaacaatgttat |
8690819 |
T |
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| Q |
183 |
agcagaagttgatgtttgcaggtttgagccttgggaattacca |
225 |
Q |
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| T |
8690820 |
agctgaagttgatgtatgcaagttcgaaccttgggatttacca |
8690862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 8704992 - 8705134
Alignment:
| Q |
83 |
ttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttccgatgttaacaatgtcat |
182 |
Q |
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| T |
8704992 |
ttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgtaaacaatgttat |
8705091 |
T |
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| Q |
183 |
agcagaagttgatgtttgcaggtttgagccttgggaattacca |
225 |
Q |
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| T |
8705092 |
agctgaagttgatgtatgcaactatgaaccttgggacttacca |
8705134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 407
Target Start/End: Complemental strand, 14372505 - 14372433
Alignment:
| Q |
335 |
taaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
407 |
Q |
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| T |
14372505 |
taaaatcagatgacccagaatggtttttcttgtgtcctattgattacaagtatgcaaagagtaaaaggtttaa |
14372433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 8705222 - 8705294
Alignment:
| Q |
335 |
taaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
407 |
Q |
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| T |
8705222 |
taaaatcagatgacccagaatggttttttttgtgtcctattgattataagtatgccaagagtaaaaggtttaa |
8705294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 8722051 - 8722211
Alignment:
| Q |
65 |
ctctcattcttgattttcttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttc |
164 |
Q |
| |
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||||||||| ||||| ||||||||| ||||||||||||| |||||| || |||| || || || |||| |||| |||||||||||||| |||| |
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| T |
8722051 |
ctctcattcatgattgtcttcctgttggattcagattccatccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaaga |
8722150 |
T |
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| Q |
165 |
cgatgttaacaatgtcatagcagaagttgatgtttgcaggtttgagccttgggaattacca |
225 |
Q |
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| T |
8722151 |
gtttgttaacaatgtcatagctgaagttgatgtattcaagtttaaaccttgggatttacca |
8722211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 407
Target Start/End: Original strand, 8740276 - 8740370
Alignment:
| Q |
313 |
tctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
407 |
Q |
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| T |
8740276 |
tctttttcagctcgttcagtgataaaatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaa |
8740370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 8723641 - 8723729
Alignment:
| Q |
319 |
tcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
407 |
Q |
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| T |
8723641 |
tcagctcgttcggtgataaaatctgatgaccaagaatggtttttcttgtgccctattgaatacaagtatgcaaagagtaaaaggtttaa |
8723729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 8723422 - 8723556
Alignment:
| Q |
91 |
ggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttccgatgttaacaatgtcatagcagaag |
190 |
Q |
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||||||||||| | |||||| |||||| ||||||||||||||||| | || ||||| |||||||||| || ||| |||||||| ||||| |||| |
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| T |
8723422 |
ggattcagattttgtccaacaggtgaagagctagttaatcactaccttagaaataagttgcttggtaatgacgccattgtaaacaatgttatagctgaag |
8723521 |
T |
|
| Q |
191 |
ttgatgtttgcaggtttgagccttgggaattacca |
225 |
Q |
| |
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||||| || ||| ||| || || |||||||||||| |
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| T |
8723522 |
ttgatattcgcaagttcgaaccatgggaattacca |
8723556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 408
Target Start/End: Original strand, 8690920 - 8691015
Alignment:
| Q |
313 |
tctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaac |
408 |
Q |
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| T |
8690920 |
tctttttcagcttgttctttgataaaatccaatgatcccgaatggtttttcttttgtcctcgcgattacaaatacgcaaatagtaaaaggtttaac |
8691015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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