View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_high_33 (Length: 377)
Name: NF1362_high_33
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 137 - 349
Target Start/End: Original strand, 43538044 - 43538256
Alignment:
| Q |
137 |
tatatatatgatttgtaacactttaaactaatcactcaagcaataatatagaactataattgtttccaaatcaatcgtaaacgattgtgttcattgtctt |
236 |
Q |
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| T |
43538044 |
tatatatatgacttgtaacactgtaaattaatcactcaagtaataatatagaactataattgtttccaaatcaatcgtaaacgattgtgttcattgtctt |
43538143 |
T |
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| Q |
237 |
gtgatttatcttttttattattcttatgttgctagttgttgttctaataaaaatgtctttgactcgtttaatcaattgtaaatttggaccatttgatttc |
336 |
Q |
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| T |
43538144 |
gtgatttatcttttttattattcttatgttgctagttgttgttctaataaaaatgtctttgactcgtttaatcaattgaaaatttggaccatttgatttc |
43538243 |
T |
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| Q |
337 |
aatcgaatggcct |
349 |
Q |
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| T |
43538244 |
aatcgaatggcct |
43538256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 43537964 - 43538036
Alignment:
| Q |
10 |
tcataggcacaaaagatcggtaaggagcgagagagttgagcgagcgtcgtgacatttgctccttttctttcat |
82 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
43537964 |
tcataggcacaaaagatcggtaaggggcgagagagttgagcgaccgtcgtgacatttgctcctattctttcat |
43538036 |
T |
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