View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_high_40 (Length: 349)
Name: NF1362_high_40
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 46 - 336
Target Start/End: Original strand, 55653375 - 55653665
Alignment:
| Q |
46 |
agagagtgaccaagttgaacatatatattatttacgaattgaacaaagacaatagattctgttcttgccttctcaaacacaccacacctaacaagagccg |
145 |
Q |
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| T |
55653375 |
agagagtgaccacgttgaacatatatattctttacgaattgaacaaagacaatagattctgttcttgccttctcaaacacaccacacctaacaagagccg |
55653474 |
T |
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| Q |
146 |
gcacaaagaggcatattccagtagacaccacaaaaaccattgtaagtatacaagacacaacccttggcaataattcacgttttggttcaaataccttctt |
245 |
Q |
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| T |
55653475 |
gcacaaagaggcatattccagtagacaccacaaaaaccattgtaagtatacaagacacaacccttggcaataattcacgttttggttcaaataccttctt |
55653574 |
T |
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| Q |
246 |
atacgcaatttgaagagccaaacacagcccatggatgaagaaaaagcacattgaatcccaacatggttcccaagcttcccatgtatccttc |
336 |
Q |
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| T |
55653575 |
atacgcaatttgaagagccaaacacaccccatggatgaagaaaaagcacattgaatcccaacatggttcccaagcttcccatgtatccttc |
55653665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 95 - 329
Target Start/End: Original strand, 55661984 - 55662219
Alignment:
| Q |
95 |
caatagattctgttcttgccttctcaaacacaccacacctaacaagagccggcacaaagaggcatattccagtagacaccacaaaaaccattgtaagtat |
194 |
Q |
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| T |
55661984 |
caatatattctgttcttatcttcacaaacaagccacacctaacaagagccggcacaaagtggcaaattccagttgacactgtgaacgccattgtaagtat |
55662083 |
T |
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| Q |
195 |
acaagacacaacccttggcaataattcacgttttggttcaaataccttcttatacgcaatttgaagagccaaacaca-gcccatggatgaagaaaaagca |
293 |
Q |
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| T |
55662084 |
acaagacacaacccttggcaataattcacctttcggtttgaataccttcttatattcaatttgaagagccaaacacacccccatggatgaagaagaagca |
55662183 |
T |
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| Q |
294 |
cattgaatcccaacatggttcccaagcttcccatgt |
329 |
Q |
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| T |
55662184 |
cattgaatcccaatatggctcccaagcctcccatgt |
55662219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 124 - 329
Target Start/End: Original strand, 4476658 - 4476863
Alignment:
| Q |
124 |
acaccacacctaacaagagccggcacaaagaggcatattccagtagacaccacaaaaaccattgtaagtatacaagacacaacccttggcaataattcac |
223 |
Q |
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|||||| ||||||||||||| || ||||||| | ||| |||||||||| || || ||||||| || ||||||||||||||||||| ||||| | |
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| T |
4476658 |
acaccagacctaacaagagctggaacaaagaagtataacgcagtagacacaacgaaggccattgtgagggtacaagacacaacccttggtaataactggt |
4476757 |
T |
|
| Q |
224 |
gttttggttcaaataccttcttatacgcaatttgaagagccaaacacagcccatggatgaagaaaaagcacattgaatcccaacatggttcccaagcttc |
323 |
Q |
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| T |
4476758 |
gttttggtttgaagatcttcttgtatgcaatttcaagagccacacacaccccatggatgaaaaagaaacacattgaatcccaacatggttcccaagcttc |
4476857 |
T |
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| Q |
324 |
ccatgt |
329 |
Q |
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|||||| |
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| T |
4476858 |
ccatgt |
4476863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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