View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_high_43 (Length: 329)

Name: NF1362_high_43
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_high_43
NF1362_high_43
[»] chr7 (20 HSPs)
chr7 (135-321)||(37002144-37002330)
chr7 (134-321)||(26624725-26624913)
chr7 (154-321)||(36630816-36630983)
chr7 (177-320)||(38638237-38638380)
chr7 (134-319)||(8867733-8867918)
chr7 (137-321)||(34389056-34389240)
chr7 (133-321)||(43184468-43184656)
chr7 (161-318)||(3114099-3114256)
chr7 (154-321)||(8394125-8394292)
chr7 (154-318)||(5555487-5555651)
chr7 (173-321)||(40920003-40920151)
chr7 (134-321)||(33685544-33685731)
chr7 (166-321)||(35090180-35090335)
chr7 (134-321)||(7002705-7002892)
chr7 (134-321)||(7048576-7048763)
chr7 (161-319)||(14777109-14777267)
chr7 (172-321)||(36658199-36658348)
chr7 (221-280)||(10868514-10868575)
chr7 (287-321)||(10868456-10868490)
chr7 (134-199)||(10876829-10876894)
[»] chr2 (23 HSPs)
chr2 (132-321)||(45418561-45418750)
chr2 (135-321)||(44084603-44084789)
chr2 (134-320)||(8147331-8147518)
chr2 (172-321)||(12756837-12756986)
chr2 (173-318)||(18981635-18981780)
chr2 (161-321)||(41251634-41251794)
chr2 (154-318)||(42439986-42440150)
chr2 (135-320)||(770975-771165)
chr2 (137-318)||(8059336-8059517)
chr2 (154-318)||(32127144-32127308)
chr2 (173-318)||(35962734-35962879)
chr2 (162-318)||(2285870-2286026)
chr2 (166-321)||(31581622-31581777)
chr2 (155-321)||(6403804-6403970)
chr2 (166-318)||(16405612-16405764)
chr2 (166-321)||(17445041-17445194)
chr2 (185-321)||(26162702-26162835)
chr2 (154-291)||(2958131-2958267)
chr2 (134-268)||(26237937-26238071)
chr2 (178-280)||(4555250-4555354)
chr2 (291-321)||(26238080-26238110)
chr2 (134-183)||(34523220-34523269)
chr2 (166-280)||(7072589-7072707)
[»] chr6 (11 HSPs)
chr6 (133-321)||(28996709-28996897)
chr6 (154-321)||(18339106-18339273)
chr6 (166-318)||(34948761-34948913)
chr6 (174-318)||(13837841-13837985)
chr6 (134-321)||(29743263-29743450)
chr6 (155-321)||(398618-398784)
chr6 (172-321)||(33229336-33229485)
chr6 (133-190)||(13646996-13647053)
chr6 (138-239)||(24697899-24698000)
chr6 (140-202)||(31028483-31028545)
chr6 (134-190)||(34385519-34385575)
[»] chr3 (19 HSPs)
chr3 (134-321)||(6930894-6931081)
chr3 (137-321)||(11018212-11018396)
chr3 (137-321)||(45182964-45183148)
chr3 (135-321)||(33040934-33041120)
chr3 (154-321)||(34084122-34084289)
chr3 (137-321)||(6503569-6503753)
chr3 (172-321)||(27935196-27935345)
chr3 (154-321)||(19390146-19390313)
chr3 (173-320)||(6269427-6269574)
chr3 (135-321)||(45335856-45336041)
chr3 (134-305)||(19565517-19565688)
chr3 (137-321)||(35514249-35514429)
chr3 (155-321)||(22968444-22968610)
chr3 (155-321)||(39771791-39771957)
chr3 (154-321)||(40081741-40081905)
chr3 (273-321)||(22922214-22922262)
chr3 (134-191)||(6890978-6891035)
chr3 (287-321)||(5135421-5135455)
chr3 (221-280)||(5135336-5135397)
[»] chr8 (14 HSPs)
chr8 (140-321)||(16788025-16788206)
chr8 (154-318)||(15838286-15838449)
chr8 (134-321)||(23402088-23402275)
chr8 (140-321)||(4403994-4404175)
chr8 (141-321)||(34136825-34137005)
chr8 (154-321)||(29728386-29728553)
chr8 (163-321)||(3648794-3648952)
chr8 (176-308)||(9877242-9877374)
chr8 (134-321)||(36408531-36408718)
chr8 (135-321)||(2729196-2729382)
chr8 (186-321)||(42230971-42231104)
chr8 (155-321)||(39914516-39914681)
chr8 (172-280)||(3435287-3435397)
chr8 (287-321)||(40470475-40470509)
[»] chr5 (21 HSPs)
chr5 (134-321)||(31680347-31680534)
chr5 (137-321)||(37254624-37254808)
chr5 (134-321)||(12278860-12279047)
chr5 (134-321)||(17332551-17332738)
chr5 (154-318)||(10033927-10034091)
chr5 (134-321)||(31501716-31501903)
chr5 (172-321)||(33430339-33430488)
chr5 (174-318)||(39657509-39657653)
chr5 (154-321)||(13817977-13818144)
chr5 (156-320)||(1776377-1776541)
chr5 (185-318)||(16333879-16334012)
chr5 (172-321)||(16155015-16155164)
chr5 (177-321)||(19985962-19986106)
chr5 (166-321)||(26283318-26283473)
chr5 (134-321)||(36291351-36291538)
chr5 (173-321)||(36293621-36293769)
chr5 (166-321)||(39434708-39434863)
chr5 (173-321)||(43068896-43069044)
chr5 (161-305)||(3155647-3155791)
chr5 (167-280)||(28801300-28801415)
chr5 (134-183)||(26543903-26543952)
[»] chr4 (40 HSPs)
chr4 (134-319)||(50205079-50205264)
chr4 (137-321)||(43143584-43143768)
chr4 (137-321)||(48989311-48989495)
chr4 (134-321)||(3292896-3293083)
chr4 (134-321)||(6690235-6690422)
chr4 (130-321)||(30216742-30216933)
chr4 (166-321)||(25930720-25930875)
chr4 (154-321)||(36382346-36382512)
chr4 (140-309)||(42333788-42333957)
chr4 (155-321)||(20129311-20129477)
chr4 (176-318)||(29319708-29319850)
chr4 (132-321)||(10352884-10353073)
chr4 (136-321)||(26448035-26448219)
chr4 (172-321)||(44156669-44156818)
chr4 (137-321)||(29995983-29996167)
chr4 (134-321)||(28877250-28877437)
chr4 (215-321)||(6235581-6235687)
chr4 (155-321)||(13012189-13012355)
chr4 (189-321)||(1817752-1817884)
chr4 (155-321)||(26439279-26439445)
chr4 (155-321)||(34407284-34407450)
chr4 (173-318)||(40529034-40529179)
chr4 (178-321)||(35545977-35546120)
chr4 (155-321)||(47500774-47500940)
chr4 (172-321)||(43355922-43356071)
chr4 (178-321)||(17511233-17511377)
chr4 (133-321)||(30077631-30077818)
chr4 (232-309)||(13392893-13392970)
chr4 (232-309)||(13396032-13396109)
chr4 (143-280)||(30109945-30110084)
chr4 (134-191)||(49908782-49908839)
chr4 (172-244)||(45194194-45194266)
chr4 (173-280)||(48129985-48130087)
chr4 (287-321)||(30110108-30110142)
chr4 (287-321)||(48130111-48130145)
chr4 (134-191)||(5517494-5517551)
chr4 (179-247)||(6254569-6254637)
chr4 (134-202)||(13392989-13393057)
chr4 (134-202)||(13396128-13396196)
chr4 (137-195)||(7769311-7769369)
[»] chr1 (14 HSPs)
chr1 (133-320)||(17445292-17445479)
chr1 (137-321)||(35907535-35907719)
chr1 (137-321)||(3828967-3829150)
chr1 (137-321)||(321377-321561)
chr1 (154-321)||(42310941-42311108)
chr1 (161-318)||(7433452-7433609)
chr1 (155-321)||(26144256-26144422)
chr1 (154-321)||(32982056-32982223)
chr1 (134-280)||(33489667-33489815)
chr1 (134-280)||(41972314-41972461)
chr1 (287-321)||(33489839-33489873)
chr1 (287-321)||(41972256-41972290)
chr1 (172-260)||(23313256-23313345)
chr1 (135-191)||(31866958-31867014)
[»] scaffold0502 (1 HSPs)
scaffold0502 (154-321)||(5230-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (133-321)||(31459-31647)
[»] scaffold0041 (1 HSPs)
scaffold0041 (173-321)||(52944-53092)
[»] scaffold0069 (1 HSPs)
scaffold0069 (173-321)||(17861-18009)
[»] scaffold0002 (1 HSPs)
scaffold0002 (155-321)||(480457-480623)
[»] scaffold2142 (1 HSPs)
scaffold2142 (161-321)||(529-689)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 135 - 321
Target Start/End: Complemental strand, 37002330 - 37002144
Alignment:
Q  135 aggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttac 234  Q
    |||||||||||||| |||||||||| |||| |||||   ||| |||||| |||||||||||||||||| |  ||||||| ||||||||||| ||||||||    
T  37002330 aggggcggtttcaccgcccggcgaccccgggcggtcgttcggtctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttac 37002231  T
Q  235 aaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37002230 aaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 37002144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 26624725 - 26624913
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgatt-gataatttttgcacattaaattcaatccagaagtcaattaatacactt 232  Q
    ||||||||||||||| ||||||| || |||| ||||| || |||||||||| ||||||||||||| |||| |  ||||||| |||| |||||| ||||||    
T  26624725 caggggcggtttcaccgcccggcaaccccgggcggtcgcctgggctcgattcgataatttttgcatattagacccaatccaaaagttaattaacacactt 26624824  T
Q  233 acaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26624825 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 26624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 154 - 321
Target Start/End: Original strand, 36630816 - 36630983
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||||||||| |||||||||||| |||||||||||||||||||| |||| | | ||||| ||||| ||| ||||||||||||||||||| |||    
T  36630816 ggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggca 36630915  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36630916 atctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctc 36630983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 177 - 320
Target Start/End: Complemental strand, 38638380 - 38638237
Alignment:
Q  177 gctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaa 276  Q
    |||||||||||||||||||||||||| || ||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38638380 gctcgattgataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaa 38638281  T
Q  277 taggtcttggaattttatttagcacactattgacgggttcatct 320  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  38638280 taggtctcggaattttatttagcacactattgacgggttcatct 38638237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 134 - 319
Target Start/End: Complemental strand, 8867918 - 8867733
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||| ||||||| |||||||||| |||| ||||| |||||||||||| ||||||||||||| |||| |  ||||||| ||| ||||||||||| |||    
T  8867918 caggggcagtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacattta 8867819  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 319  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  8867818 caaaaagaaaaatttgggcaatcggaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatc 8867733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 137 - 321
Target Start/End: Complemental strand, 34389240 - 34389056
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    ||||| |||||| |||||||||| |||| ||||| |||||||||||| |||||||||||||||||| |  ||| ||| |||  |||||| ||||||||||    
T  34389240 gggcgatttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaa 34389141  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||    
T  34389140 aaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattatcgacgggttcatctc 34389056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 133 - 321
Target Start/End: Complemental strand, 43184656 - 43184468
Alignment:
Q  133 acaggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactt 232  Q
    |||||||||||||||| ||||||||| ||||| ||||| | |||||||||| |||||||||| | ||| | | | || ||| ||| ||||||| | ||||    
T  43184656 acaggggcggtttcaccgcccggcgattccgggcggtcgctcgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatactt 43184557  T
Q  233 acaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  43184556 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 43184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 161 - 318
Target Start/End: Complemental strand, 3114256 - 3114099
Alignment:
Q  161 ccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaa 260  Q
    |||||||||| |||||||||||| |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||||||||||||||||||| ||||||||||    
T  3114256 ccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaa 3114157  T
Q  261 aattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3114156 aattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 3114099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 154 - 321
Target Start/End: Original strand, 8394125 - 8394292
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||| |||||||||||| |||||||||||||||||||| |||| | | ||||| ||||| ||| |||||||| |||||||||| |||    
T  8394125 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggca 8394224  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  8394225 atctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacgggtttatctc 8394292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 154 - 318
Target Start/End: Original strand, 5555487 - 5555651
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||| ||| ||| | |||||  || ||||||||||||||||||| |||    
T  5555487 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaaaaagaaaaatttgggca 5555586  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5555587 atctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcat 5555651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 173 - 321
Target Start/End: Complemental strand, 40920151 - 40920003
Alignment:
Q  173 ccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 272  Q
    ||||||||||| |||||||||||||||||| ||| || ||| ||| ||||||| ||| |||||||||||||||||||  ||||||||||||||||||| |    
T  40920151 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 40920052  T
Q  273 caaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40920051 caaataggtctcggaattttatttagcacactattgacgggttcatctc 40920003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 33685544 - 33685731
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||| || | | ||| | |||||||||| ||||||||||||||||||||  ||| ||| ||| | ||||| |||||||    
T  33685544 caggggcggtttcaccgcccggcgaccccaggcagtcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacactta 33685643  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| ||||   ||||||||||||||||||||||||||||| |||||    
T  33685644 caaaaagaaaaatttgggcaatctgaaaattctcatacgcaaatatgtctcataattttatttagcacactattgacgggtttatctc 33685731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 166 - 321
Target Start/End: Original strand, 35090180 - 35090335
Alignment:
Q  166 cggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattc 265  Q
    ||||| ||||||||||||  ||||||||||||||||| |  ||| ||| ||| ||||||| ||||||||||||||||||||||| | |||||||||||||    
T  35090180 cggtcgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaattc 35090279  T
Q  266 tcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  35090280 tcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 35090335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 7002705 - 7002892
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||| |||  ||||| |||||||||||| ||  ||||||  |||||| |  ||| ||| ||| ||||||| |||| ||    
T  7002705 caggggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacata 7002804  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||| |||||||||  |||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7002805 caaaaataaaaatttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 7048576 - 7048763
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||| |||  ||||| |||||||||||| ||  ||||||  |||||| |  ||| ||| ||| ||||||| |||| ||    
T  7048576 caggggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacata 7048675  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||| |||||||||  |||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7048676 caaaaataaaaatttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctc 7048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 161 - 319
Target Start/End: Complemental strand, 14777267 - 14777109
Alignment:
Q  161 ccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaa 260  Q
    |||| ||||| |||||||||||| |||||||||||||||||| | |||| ||| |||   ||||| ||| ||||||||||||||||||| ||||||||||    
T  14777267 ccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaa 14777168  T
Q  261 aattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 319  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||    
T  14777167 aattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatc 14777109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 172 - 321
Target Start/End: Original strand, 36658199 - 36658348
Alignment:
Q  172 cccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 271  Q
    ||||| |||||| |||||||||||||||||  |  ||| | | ||| ||||||| | ||| ||||||| ||||||||| |||||||||||||||||||||    
T  36658199 cccggactcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaaatttgggcaatctgaaaattctcacac 36658298  T
Q  272 gcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36658299 gcaaataggtctcggaattttatttagcacactattgacgggttcatctc 36658348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 10868575 - 10868514
Alignment:
Q  221 attaatacacttacaaaaagaaaaatttgagcaa--tctgaaaattctcacacgcaaatagg 280  Q
    ||||| ||| ||||||||||||||||||| ||||  ||||||||||||||| ||||||||||    
T  10868575 attaacacatttacaaaaagaaaaatttgggcaaaatctgaaaattctcacgcgcaaatagg 10868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 321
Target Start/End: Complemental strand, 10868490 - 10868456
Alignment:
Q  287 aattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||| ||||||||||||||||    
T  10868490 aattttatttagcacacttttgacgggttcatctc 10868456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 10876894 - 10876829
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcaca 199  Q
    ||||||| |||||||| ||||||||  |||   |||| |||||||||||| |||||||||||||||    
T  10876894 caggggcagtttcacttcccggcgaacccgtgtggtcgcccgggctcgatcgataatttttgcaca 10876829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 132 - 321
Target Start/End: Original strand, 45418561 - 45418750
Alignment:
Q  132 tacaggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacact 231  Q
    ||||||||||||||||| |||||||||| |||| ||||| |||||||||||| |||||||||||| ||||| || ||| ||| ||| ||||||| |||||    
T  45418561 tacaggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacact 45418660  T
Q  232 tacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  45418661 tacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctc 45418750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 135 - 321
Target Start/End: Complemental strand, 44084789 - 44084603
Alignment:
Q  135 aggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttac 234  Q
    |||||||||||||| |||||||||| |||| | ||| |||||||||||| ||||||||||||||||||||  ||||||| ||||  ||||| ||||||||    
T  44084789 aggggcggtttcaccgcccggcgaccccgggcagtcgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttac 44084690  T
Q  235 aaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  44084689 aaaaagaaaaatttgggcaatctgaaaattctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctc 44084603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 134 - 320
Target Start/End: Original strand, 8147331 - 8147518
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||| |||| ||||| |||||||||||| |||||| ||||||||||| |  |||  || ||||||||||| |||||||    
T  8147331 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacactta 8147430  T
Q  234 caaaaagaaaaatttgagcaatctgaaaa-ttctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatct 320  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  8147431 caaaaagaaaaatttgggcaatctgaaaaattctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 172 - 321
Target Start/End: Complemental strand, 12756986 - 12756837
Alignment:
Q  172 cccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 271  Q
    |||||| ||||| |||||||||||| ||||| |  ||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12756986 cccgggttcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 12756887  T
Q  272 gcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  12756886 gcaaataagtctcggaattttatttagcacactattgacgggttcatctc 12756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 173 - 318
Target Start/End: Original strand, 18981635 - 18981780
Alignment:
Q  173 ccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 272  Q
    |||||||||||||||||||||||||||||| | |||| ||| ||||| ||||| ||| ||||||||||||||||||| ||||| | |||||| |||||||    
T  18981635 ccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaaaaagaaaaatttgggcaatttaaaaattgtcacacg 18981734  T
Q  273 caaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  18981735 caaataggtcttggaattttatttagcacactgttgacgggttcat 18981780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 161 - 321
Target Start/End: Complemental strand, 41251794 - 41251634
Alignment:
Q  161 ccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaa 260  Q
    |||| ||||| |||||||||||| |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||||||||||||||||||| ||||||||||    
T  41251794 ccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaa 41251695  T
Q  261 aattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  41251694 aattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 41251634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 154 - 318
Target Start/End: Original strand, 42439986 - 42440150
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||| |||||||||||| |||||||||||||||||| | | || ||| ||| | ||||| ||| ||||||||||||||||||| |||    
T  42439986 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 42440085  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  42440086 atctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgacggattcat 42440150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 770975 - 771165
Alignment:
Q  135 aggggcggtttcactgcccggcgact-----ccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaataca 229  Q
    |||||||||||||| ||||||||||      |||| ||||| |||||||||||| ||||| |||||||||||| |  ||| | | ||| | ||||| |||    
T  770975 aggggcggtttcaccgcccggcgaccggatcccgggcggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacaca 771074  T
Q  230 cttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatct 320  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||    
T  771075 cttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 137 - 318
Target Start/End: Complemental strand, 8059517 - 8059336
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||||||||||| ||||| |||| |||| || || ||| ||||| || |||||||||||||||||| | |||| ||| ||| ||||||| ||||||||||    
T  8059517 gggcggtttcaccgcccgacgaccccggccgatcgcccaggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaa 8059418  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    |||||||||||||  |||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  8059417 aaagaaaaatttggccaatttgaaaattctcacacacaaatcggtctcggaattttatttagcacacaattgacgggttcat 8059336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 154 - 318
Target Start/End: Complemental strand, 32127308 - 32127144
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||| ||||||||||||  ||||||||||||||||||| || | ||| |||   ||||| ||| ||||||||||||||||||  |||    
T  32127308 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaaaagaaaaatttaggca 32127209  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32127208 atctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgacgggttcat 32127144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 173 - 318
Target Start/End: Original strand, 35962734 - 35962879
Alignment:
Q  173 ccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 272  Q
    ||||||||||| |||||||||||||||||| | |||| ||| |||   ||||| ||| |||||||||||||| |||| |||||||||||||| ||||||     
T  35962734 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaaaaagaaaattttgggcaatctgaaaattgtcacaca 35962833  T
Q  273 caaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35962834 caaataggtcttggaattttatttagcacactattgacgggttcat 35962879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 2285870 - 2286026
Alignment:
Q  162 cggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaa 261  Q
    ||||||||||  | || ||||| ||||||||||||||||||||| ||| | | ||||| ||||| ||| |||| ||| ||||||||||||||||||||||    
T  2285870 cggacggtcattcaggttcgatcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacgaaaggaaaaatttgagcaatctgaaa 2285969  T
Q  262 attctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  2285970 attgtcacacgcaaataggttttggaattttatttagcacactattgacgtgttcat 2286026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 166 - 321
Target Start/End: Complemental strand, 31581777 - 31581622
Alignment:
Q  166 cggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattc 265  Q
    ||||| ||| |||||||  |||| |||||||| |||| | |||  ||| ||| | ||||| ||| ||||||||||||||||||| ||||||||||||||     
T  31581777 cggtcgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattg 31581678  T
Q  266 tcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31581677 tcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 31581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 155 - 321
Target Start/End: Complemental strand, 6403970 - 6403804
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||| | | ||||  ||||| ||| ||| ||||||||||||||| ||||    
T  6403970 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggcaa 6403871  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  6403870 tctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 6403804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 166 - 318
Target Start/End: Original strand, 16405612 - 16405764
Alignment:
Q  166 cggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattc 265  Q
    ||||| ||||||||| || |||||||||||||| ||| | |||| ||| |||   ||||| ||| ||| |||||||||||||||  |||||||||||||     
T  16405612 cggtcgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacatttataaaaagaaaaatttggacaatctgaaaattg 16405711  T
Q  266 tcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16405712 tcacacgcaaataagtcttggaattttatttagcacactattgacgggttcat 16405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 166 - 321
Target Start/End: Complemental strand, 17445194 - 17445041
Alignment:
Q  166 cggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattc 265  Q
    ||||| |||| ||||||| ||||||||||||||  || | |||| ||| ||| | ||||| ||| ||||||||||||||||||| ||||||||||||||     
T  17445194 cggtcgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattg 17445097  T
Q  266 tcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  17445096 tcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 17445041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 321
Target Start/End: Complemental strand, 26162835 - 26162702
Alignment:
Q  185 gataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtctt 284  Q
    |||||||||| |||||||||||||| ||| ||  | ||||| ||||||||||||||||||||||| ||||||| |||||||||| || |||||||||||     
T  26162835 gataatttttacacattaaattcaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaatctaaaaattctcaaacacaaataggtctc 26162736  T
Q  285 ggaattttatttagcacactattgacgggttcatctc 321  Q
    |||   |||||||||||| ||||||||||||||||||    
T  26162735 gga---ttatttagcacattattgacgggttcatctc 26162702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 154 - 291
Target Start/End: Complemental strand, 2958267 - 2958131
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| |||||  ||||||||||| ||||||||| |||||||| | |||| ||| ||| | ||||| ||| ||||||| ||||||||||| | |    
T  2958267 ggcgaccccgggcggtcgtccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacatttacaaagagaaaaatttgggta 2958169  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattt 291  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  2958168 atctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 268
Target Start/End: Original strand, 26237937 - 26238071
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    |||||| ||||| || |||||||||| |||| ||||| |||||||||||| |||| |||||||| |||| || ||| ||| ||||| ||||| |||||||    
T  26237937 caggggtggttttacagcccggcgaccccgggcggtcgcccgggctcgatcgata-tttttgcaaattagatgcaaaccaaaagtccattaacacactta 26238035  T
Q  234 caaaaagaaaaatttgagc-aatctgaaaattctca 268  Q
    |||||||||||||||| || |||||||||| |||||    
T  26238036 caaaaagaaaaatttgggcaaatctgaaaactctca 26238071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 4555354 - 4555250
Alignment:
Q  178 ctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa--tctgaaaattctcacacgcaa 275  Q
    |||||| |||||||||||||||| |||  ||| ||| |||    |||| |||||||||||||||||| |||| ||||  |||||||||||||||||| ||    
T  4555354 ctcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttacaaaaagaaaattttgggcaaaatctgaaaattctcacacgtaa 4555255  T
Q  276 atagg 280  Q
    |||||    
T  4555254 atagg 4555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Original strand, 26238080 - 26238110
Alignment:
Q  291 ttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||||||||||||||||    
T  26238080 ttatttagcacactattgacgggttcatctc 26238110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 34523220 - 34523269
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgat 183  Q
    |||||||||||| || |||||||||| |||| ||||| ||||||||||||    
T  34523220 caggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgat 34523269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 280
Target Start/End: Complemental strand, 7072707 - 7072589
Alignment:
Q  166 cggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaatta--atacacttacaaaaagaaaaatttgagcaa--tctgaaa 261  Q
    ||||| |||||||||||| ||||||||||  |||||||| |||| ||| ||| | ||||  | ||||||| ||||||||||  |||  |||  |||||||    
T  7072707 cggtcgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacacacacttataaaaagaaaatattggacaaattctgaaa 7072608  T
Q  262 attctcacacgcaaatagg 280  Q
    |||||| |||| |||||||    
T  7072607 attctcgcacgtaaatagg 7072589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 133 - 321
Target Start/End: Original strand, 28996709 - 28996897
Alignment:
Q  133 acaggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactt 232  Q
    |||||||||||||||| |||||||||| |||| ||||| |||| ||||||| |||||||||||| ||||| |  ||| | | ||||||||||| ||||||    
T  28996709 acaggggcggtttcaccgcccggcgaccccgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacactt 28996808  T
Q  233 acaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28996809 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 28996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 154 - 321
Target Start/End: Original strand, 18339106 - 18339273
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||| ||||||||||||  ||||||||||||||||| |  ||||| | ||| ||||||| |||||||||||||||||| |||| |||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 18339205  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18339206 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 18339273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 166 - 318
Target Start/End: Complemental strand, 34948913 - 34948761
Alignment:
Q  166 cggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattc 265  Q
    ||||| ||| |||||||| |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||||||||||||||||||| ||||||||||||||     
T  34948913 cggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattg 34948814  T
Q  266 tcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  34948813 tcacacacaaatagatcttgaaattttatttagcacactattgacgggttcat 34948761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 174 - 318
Target Start/End: Original strand, 13837841 - 13837985
Alignment:
Q  174 cgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgc 273  Q
    |||| ||||| ||||||||||| |||||| | |||| ||| |||   || || ||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  13837841 cgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgc 13837940  T
Q  274 aaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13837941 aaataggtcttggaattttatttagcacactattgacgggttcat 13837985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 29743263 - 29743450
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| | ||| |||  |||| ||||  ||||||||| || |||||||||||||||||| |  ||| | | ||||  ||||| ||| |||    
T  29743263 caggggcggtttcaccgtccgacgatcccgggcggttgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacattta 29743362  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    || ||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || ||| ||||||||    
T  29743363 cagaaagaaaaatttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtgccggattcatctc 29743450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 155 - 321
Target Start/End: Original strand, 398618 - 398784
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||| | | |||   ||||| ||| ||| ||||||||||||||| ||||    
T  398618 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 398717  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  398718 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 398784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 172 - 321
Target Start/End: Complemental strand, 33229485 - 33229336
Alignment:
Q  172 cccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 271  Q
    |||||||||||| ||| ||||||| |||||| |  ||| ||| ||||| ||||| ||| || |||||||||||||||| |||||||||||||||| ||||    
T  33229485 cccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaatctgaaaattcttacac 33229386  T
Q  272 gcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    | ||||| |||| || ||||||||||||||||||||| ||| ||||||||    
T  33229385 gtaaataagtctcgggattttatttagcacactattgccggattcatctc 33229336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 13646996 - 13647053
Alignment:
Q  133 acaggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataat 190  Q
    ||||||||||||||||  ||||||||| |||| ||||| |||||||||||| ||||||    
T  13646996 acaggggcggtttcaccacccggcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 24698000 - 24697899
Alignment:
Q  138 ggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaa 237  Q
    ||||||||||| |||||||||| ||||||  || ||||||||| || |||||||||| |||||||    ||| ||| ||| | ||||| |||||||||||    
T  24698000 ggcggtttcaccgcccggcgaccccggacactcgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaaa 24697901  T
Q  238 aa 239  Q
    ||    
T  24697900 aa 24697899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 31028545 - 31028483
Alignment:
Q  140 cggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacatta 202  Q
    ||||||||| |||||||||| |||  ||||  ||||| |||||| ||||||||||||||||||    
T  31028545 cggtttcaccgcccggcgaccccgagcggttgcccggactcgatcgataatttttgcacatta 31028483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 34385575 - 34385519
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataat 190  Q
    ||||||||||||||| |||||||||| |||| ||||  ||| |||||||| ||||||    
T  34385575 caggggcggtttcaccgcccggcgaccccgggcggttgccctggctcgatcgataat 34385519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 134 - 321
Target Start/End: Complemental strand, 6931081 - 6930894
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||| ||||| || ||| ||| ||| ||||||| ||| |||    
T  6931081 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacattta 6930982  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  6930981 caaaaagaaaaatttaggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 6930894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 137 - 321
Target Start/End: Complemental strand, 11018396 - 11018212
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||||||||||| | ||||||||||||| ||||| ||| |||||||| |||||||||||||||||| | |||| ||| ||| ||||||| ||||||||||    
T  11018396 gggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaa 11018297  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  11018296 aaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctc 11018212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 137 - 321
Target Start/End: Original strand, 45182964 - 45183148
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||||||||||| |||||||||| |||| ||||| |||||||||||| |||||||||||| ||||| |  ||| ||| ||| ||||||| ||||||||||    
T  45182964 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaa 45183063  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45183064 aaagaaaaatttgggcaatctgaaaattctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctc 45183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 135 - 321
Target Start/End: Original strand, 33040934 - 33041120
Alignment:
Q  135 aggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttac 234  Q
    |||||||||||||| |||||||||| |||| ||||| | |||||||||||||||||||||||| |||| |  ||| ||| |||  |||||| ||||||||    
T  33040934 aggggcggtttcaccgcccggcgaccccgggcggtcgctcgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttac 33041033  T
Q  235 aaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||| |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33041034 aaaaagaaaaatttgaacaatttgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 154 - 321
Target Start/End: Complemental strand, 34084289 - 34084122
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||| | | ||||| ||||| ||| ||||||||||||||||||| |||    
T  34084289 ggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggca 34084190  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34084189 atatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattgatgggttcatctc 34084122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 137 - 321
Target Start/End: Complemental strand, 6503753 - 6503569
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||||||||||| | |||||||| |||| ||||| |||||||||||| ||| ||||||||| |||| | |||| ||| ||| ||||||  ||||||||||    
T  6503753 gggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaa 6503654  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||| |||||||||||    
T  6503653 aaagaaaaatttaagcaatctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattgatgggttcatctc 6503569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 172 - 321
Target Start/End: Original strand, 27935196 - 27935345
Alignment:
Q  172 cccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 271  Q
    |||||||||||| ||||||||||||||||||||  ||| ||| |||   ||||| ||||||||||||||||||||||| |||||||||||||||||| ||    
T  27935196 cccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcatac 27935295  T
Q  272 gcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    | |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  27935296 gaaaataggtctcggaattttatttagcatactattgacgggttcatctc 27935345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 321
Target Start/End: Original strand, 19390146 - 19390313
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| |||||  ||||| ||||| |||||||||||||||||| | |||| | | ||||| ||||| ||| ||||||||||||||||||| |||    
T  19390146 ggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaaaaagaaaaatttgggca 19390245  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  19390246 atctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctc 19390313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 6269574 - 6269427
Alignment:
Q  173 ccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 272  Q
    |||| |||||| |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||||||||||||||||||| |||||||||||||| |||||||    
T  6269574 ccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacg 6269475  T
Q  273 caaataggtcttggaattttatttagcacactattgacgggttcatct 320  Q
     ||||||||||||||||||||||||||||||||||||| | |||||||    
T  6269474 taaataggtcttggaattttatttagcacactattgacagtttcatct 6269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 135 - 321
Target Start/End: Original strand, 45335856 - 45336041
Alignment:
Q  135 aggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttac 234  Q
    |||||||||||||| ||||||||||  ||| ||||| ||||| ||| || |||||||||| ||||||| |  ||| | | |||||| |||| ||| ||||    
T  45335856 aggggcggtttcaccgcccggcgacctcgggcggtcgcccggactcaatcgataatttttacacattagacccaaccaaaaagtca-ttaacacatttac 45335954  T
Q  235 aaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  45335955 aaaaagaaaaatctgggcaatctgaaaattcttacacgcaaataggtcttggaattttatttagcacactagtgccggattcatctc 45336041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 134 - 305
Target Start/End: Complemental strand, 19565688 - 19565517
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||  |||| ||||| |||||| || || |||||||||||||||||| |  ||| | | || || ||||| ||| |||    
T  19565688 caggggcggtttcaccgcccggcgatcccgggcggtcgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacattta 19565589  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacacta 305  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  19565588 caaaaagaaaaatttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 137 - 321
Target Start/End: Original strand, 35514249 - 35514429
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||| ||||||| |||||||||| ||||||||||  ||||||||||| ||||||||| ||| | || || ||| ||| ||||| ||||| ||||    ||    
T  35514249 gggcagtttcaccgcccggcgaccccggacggtcgtccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacacac----aa 35514344  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||  |||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  35514345 aaagaaaaatttggacaatatgaaaattctcactcgcaaataggtctaggaattttattttgcacactattgacgggttcatctc 35514429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 321
Target Start/End: Complemental strand, 22968610 - 22968444
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| |||||  ||||||||||| |||||||||||||||||| | | || ||| ||| | ||||| ||| ||||||||||||||||||| ||||    
T  22968610 gcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaa 22968511  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||    
T  22968510 tctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgacagtttcatctc 22968444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 155 - 321
Target Start/End: Original strand, 39771791 - 39771957
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||| | |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||| ||||||||||||||| ||||    
T  39771791 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 39771890  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||| ||||||| |||||||||||| ||||||||||  |||||||||||| | ||||||||    
T  39771891 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 39771957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 154 - 321
Target Start/End: Complemental strand, 40081905 - 40081741
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||||| ||| |||| |||||||||||| ||||||||||| |||||| | |||| ||| |||   ||||| ||| ||||||||||||||||||| |||    
T  40081905 ggcgactctgga-ggtcgcccgggctcgatcgataatttttgaacattagactcaa-ccaaaagctcattaacacatttacaaaaagaaaaatttgggca 40081808  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    || |||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  40081807 atttgaaaattgtcacacgcaaatagatcttgg-attttttttagcacactattgacgggttcatctc 40081741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 22922214 - 22922262
Alignment:
Q  273 caaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  22922214 caaatagatcttggaattttatttaacacactattgacgggttcatctc 22922262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 6890978 - 6891035
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatt 191  Q
    ||||||||||||||| |||||||||| |||| ||||| |||||||||||| |||||||    
T  6890978 caggggcggtttcaccgcccggcgacaccgggcggtcgcccgggctcgatcgataatt 6891035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 5135421 - 5135455
Alignment:
Q  287 aattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||||||||||||||||||||    
T  5135421 aattttatttagcacactattgacgggttcatctc 5135455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 5135336 - 5135397
Alignment:
Q  221 attaatacacttacaaaaagaaaaatttgagc--aatctgaaaattctcacacgcaaatagg 280  Q
    ||||| |||||||||||||||||||||||  |  |||| |||||||||||||| ||||||||    
T  5135336 attaacacacttacaaaaagaaaaatttggacaaaatccgaaaattctcacacacaaatagg 5135397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 140 - 321
Target Start/End: Complemental strand, 16788206 - 16788025
Alignment:
Q  140 cggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaa 239  Q
    |||||||| |||||||| || |||| ||||| |||||||||||| |||||||||||||||||| | |||| ||| ||| ||||||| |||||||||||||    
T  16788206 cggtttcattgcccggcaaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaa 16788107  T
Q  240 gaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16788106 gaaaaatttgggcaatcttaaaactctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 16788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 154 - 318
Target Start/End: Original strand, 15838286 - 15838449
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| | | ||||| ||||| ||| |||||||| |||||||||| |||    
T  15838286 ggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaa-gaaaaatttgggca 15838384  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15838385 atctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 15838449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 23402088 - 23402275
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||| |||| ||||| |||||||||||| |||||| |||||| |||| |  ||| ||| ||| ||||||| |||||||    
T  23402088 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacactta 23402187  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||    
T  23402188 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttaacacactattgactggttcatctc 23402275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 140 - 321
Target Start/End: Original strand, 4403994 - 4404175
Alignment:
Q  140 cggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaa 239  Q
    ||||||||||| |||||||| || | ||||| |||||||||||| |||||||||||||||||| | |||| ||| ||| ||||||| | |||||||||||    
T  4403994 cggtttcactggccggcgaccccaggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaa 4404093  T
Q  240 gaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  4404094 gaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctc 4404175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 34137005 - 34136825
Alignment:
Q  141 ggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaag 240  Q
    |||||||| | | |||||| |||  ||||| |||||||||||| |||||||||||||||||| | |||| ||| ||||||||||| ||||||||||||||    
T  34137005 ggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaaaaag 34136906  T
Q  241 aaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||    
T  34136905 aaaaatttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattgatgggttcatctc 34136825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 154 - 321
Target Start/End: Complemental strand, 29728553 - 29728386
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||||||||| |||| ||||||| ||||| |||||||||||| | |||| ||| |||   ||||| ||| ||||||||||||||||||| |||    
T  29728553 ggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggca 29728454  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29728453 atctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctc 29728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 163 - 321
Target Start/End: Complemental strand, 3648952 - 3648794
Alignment:
Q  163 ggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaa 262  Q
    |||| ||| |||||||||||| |||||||||| ||||||| | |||| ||| ||| | ||||| ||| |||||||||||||| |||| ||||||||||||    
T  3648952 ggacagtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaatctgaaaa 3648853  T
Q  263 ttctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    || |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  3648852 ttgtcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctc 3648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 9877242 - 9877374
Alignment:
Q  176 ggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaa 275  Q
    ||||||||||||||||||||||||||| |   || ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaa 9877341  T
Q  276 ataggtcttggaattttatttagcacactattg 308  Q
    |||||||| | ||||||||||||||||||||||    
T  9877342 ataggtctcgaaattttatttagcacactattg 9877374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 36408531 - 36408718
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    |||||| |||||||| ||||||||||  ||| ||||| |||||||||||| |||||||||||||||||| || ||| ||| ||||| ||||| ||| |||    
T  36408531 caggggtggtttcaccgcccggcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacattta 36408630  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| |||  ||||| |||||||||| |||||| |||||||||  |||||||||||| |||||||||| ||| ||||||||    
T  36408631 caaaaagaaaatttttggcaatttgaaaattcttacacgctaataggtctcagaattttatttaacacactattgccggattcatctc 36408718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 135 - 321
Target Start/End: Complemental strand, 2729382 - 2729196
Alignment:
Q  135 aggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttac 234  Q
    |||||||||||||| |||||||||| |||| ||| | |||||||||||| |||||||||| |||||||||| ||||||| ||| | ||||| |||||||     
T  2729382 aggggcggtttcaccgcccggcgaccccgggcggacgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttat 2729283  T
Q  235 aaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||  |||  ||||| |||||| ||||| ||||||||||||||   ||||||||||||||||||||||| || ||||||||    
T  2729282 aaaaagaaattttttggcaatttgaaaactctcatacgcaaataggtctcaaaattttatttagcacactattgatggattcatctc 2729196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 186 - 321
Target Start/End: Original strand, 42230971 - 42231104
Alignment:
Q  186 ataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttg 285  Q
    |||||||||||||||||||| |||  || ||||| |||||  |||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||      
T  42230971 ataatttttgcacattaaatccaactcaaaagtccattaa--cacttacaaaaagaaaaatttgggcaatttgaaaattctcatatgcaaataggtctca 42231068  T
Q  286 gaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||||||||||||||| ||||||||    
T  42231069 gaattttatttagcacactattgacggattcatctc 42231104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 155 - 321
Target Start/End: Original strand, 39914516 - 39914681
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||| | | |||   ||||| ||| ||| ||||| ||||||||| ||||    
T  39914516 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaa-aaaaatttgggcaa 39914614  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    | |||||||| ||||| | ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  39914615 tttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgacagtttcatctc 39914681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 280
Target Start/End: Original strand, 3435287 - 3435397
Alignment:
Q  172 cccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagc--aatctgaaaattctcac 269  Q
    |||||||| ||| |||||||||||||||||| |  ||| ||| ||  | ||||| ||||||||||||||||||||||| ||  ||||||||||||||||     
T  3435287 cccgggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaaaatctgaaaattctcaa 3435386  T
Q  270 acgcaaatagg 280  Q
    |||||||||||    
T  3435387 acgcaaatagg 3435397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 321
Target Start/End: Complemental strand, 40470509 - 40470475
Alignment:
Q  287 aattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||||||||||||||||||||    
T  40470509 aattttatttagcacactattgacgggttcatctc 40470475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 31680347 - 31680534
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||| |||| ||||| |||||||||||| |||||||||| | ||||| |  ||| ||| ||| ||||||| |||||||    
T  31680347 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacactta 31680446  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31680447 caaaaagaaaaatttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 31680534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 137 - 321
Target Start/End: Original strand, 37254624 - 37254808
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||||||||||| || ||||||| || | ||||| ||| |||||||| |||||||||||||||||| |  ||| ||| ||||||||||| ||||||||||    
T  37254624 gggcggtttcaccgctcggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaa 37254723  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  37254724 aaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctc 37254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 134 - 321
Target Start/End: Complemental strand, 12279047 - 12278860
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||  |||| ||||| ||||| |||||| |||||||||||||||||| |  ||| ||| | | ||||||| |||||||    
T  12279047 caggggcggtttcaccgcccggcgatcccgggcggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacactta 12278948  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  12278947 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacaggttcatctc 12278860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 134 - 321
Target Start/End: Complemental strand, 17332738 - 17332551
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||| |||| || || |||||||||||| ||||||||||||| |||| |  ||| ||| ||| ||||||| |||||||    
T  17332738 caggggcggtttcaccgcccggcgaccccgggcgttcgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacactta 17332639  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  17332638 caaaaagaaaaatttgggcaatctgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctc 17332551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 154 - 318
Target Start/End: Original strand, 10033927 - 10034091
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| ||||||| || |||||||||||| |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||||||||||||||||||| |||    
T  10033927 ggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 10034026  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10034027 atctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 10034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 134 - 321
Target Start/End: Complemental strand, 31501903 - 31501716
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||| |||| || |  |||||||||||| |||||||||||||||||| |  ||| ||| ||| ||||||| |||||||    
T  31501903 caggggcggtttcaccgcccggcgaccccgggcgattgcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacactta 31501804  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| | |||||||||    
T  31501803 caaaaagaaaaatttgggcaatctgaaaattctcgcacgcaaataggtctcgaaattttatttagcacactattgatgagttcatctc 31501716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 172 - 321
Target Start/End: Original strand, 33430339 - 33430488
Alignment:
Q  172 cccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 271  Q
    |||||||||||| |||||||||||| ||||| |  ||| ||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  33430339 cccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacac 33430438  T
Q  272 gcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33430439 gcaaataggtctcggaattttatttagcacactattgacgggttcatctc 33430488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 174 - 318
Target Start/End: Complemental strand, 39657653 - 39657509
Alignment:
Q  174 cgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgc 273  Q
    ||||||||||||||||||||||||||||| | |||| ||| |||   ||||| ||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  39657653 cgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgc 39657554  T
Q  274 aaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39657553 aaataggtcttggaattttatttagcacactattgacgggttcat 39657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 321
Target Start/End: Original strand, 13817977 - 13818144
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||| | |||||||||| |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||||||||||||||||||| |||    
T  13817977 ggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 13818076  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  13818077 atctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgacgggctcatctc 13818144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 156 - 320
Target Start/End: Complemental strand, 1776541 - 1776377
Alignment:
Q  156 cgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaat 255  Q
    |||| |||| ||||| |||||||||||| ||||||||||| |||||||| |||| | | ||||| ||||| ||| ||||||||||||||||||| |||||    
T  1776541 cgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggcaat 1776442  T
Q  256 ctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatct 320  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  1776441 ttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacaggttcatct 1776377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 185 - 318
Target Start/End: Complemental strand, 16334012 - 16333879
Alignment:
Q  185 gataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtctt 284  Q
    |||||||||||||||||| |||||| ||| ||| | ||||| ||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  16334012 gataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtctt 16333913  T
Q  285 ggaattttatttagcacactattgacgggttcat 318  Q
    |||||||||||||||||||||||||||| |||||    
T  16333912 ggaattttatttagcacactattgacggattcat 16333879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 172 - 321
Target Start/End: Original strand, 16155015 - 16155164
Alignment:
Q  172 cccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 271  Q
    |||||||||||| |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||| ||||||||||||||  |||||||||||||| ||||||    
T  16155015 cccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacac 16155114  T
Q  272 gcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  16155115 gcaaataggtcttggaattttatttagcacactattgacagattcatctc 16155164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 321
Target Start/End: Original strand, 19985962 - 19986106
Alignment:
Q  177 gctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaa 276  Q
    ||||||| |||||||||||||||||| |||||| ||| ||||| ||||  ||| ||||||||||||||||||| | ||||| |||||| |||||||||||    
T  19985962 gctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaagaaaaatttgggtaatctaaaaattatcacacgcaaa 19986061  T
Q  277 taggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||    
T  19986062 taggtcttgaaattttatttaacacactattgacaggttcatctc 19986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 166 - 321
Target Start/End: Complemental strand, 26283473 - 26283318
Alignment:
Q  166 cggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattc 265  Q
    ||||| |||||||||||| |||||||||||||||||| | |||| | | ||||  ||||| ||| ||| ||||||||||||||| ||||||||||||||     
T  26283473 cggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggcaatctgaaaattg 26283374  T
Q  266 tcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  26283373 tcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 26283318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 36291351 - 36291538
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| ||||| ||||||||| |||||  ||||| |||||  ||||||||||||||||| ||  || | | ||||  ||||| ||| |||    
T  36291351 caggggcggtttcaccgcccgccgactccgggcggtcgtccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacattta 36291450  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||| ||||||| |||||| | |||| |||||||||||  |||||||||||| |||||||||||||||||||||||    
T  36291451 caaaaagaaaaatttgggcaatctcaaaattattacacacaaataggtctcagaattttatttaacacactattgacgggttcatctc 36291538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 173 - 321
Target Start/End: Complemental strand, 36293769 - 36293621
Alignment:
Q  173 ccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 272  Q
    |||| |||||| ||||||||||| |||||| | |||| ||| ||| | ||||| ||| ||||||||||||||||||| |||||||||||||| |||||||    
T  36293769 ccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacg 36293670  T
Q  273 caaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
     |||||||||||||||||||||||||||||||||| || | ||||||||    
T  36293669 taaataggtcttggaattttatttagcacactatttacagtttcatctc 36293621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 166 - 321
Target Start/End: Original strand, 39434708 - 39434863
Alignment:
Q  166 cggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattc 265  Q
    ||||| |||||||||||| |||||||||| ||||||| | |||| ||| ||| | ||||| ||| |||||||| |||||||||| ||||||||||||||     
T  39434708 cggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaatgaaaaatttgggcaatctgaaaattg 39434807  T
Q  266 tcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||| | ||||||||||| ||||||||||||||||||||||||| | ||||||||    
T  39434808 tcacatgtaaataggtctttgaattttatttagcacactattgacagtttcatctc 39434863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 321
Target Start/End: Original strand, 43068896 - 43069044
Alignment:
Q  173 ccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 272  Q
    |||||||||||  ||||||||| ||||||| |  ||| ||| ||||| ||||| ||| ||||||||||||||||||| |||||||||||||||| ||| |    
T  43068896 ccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttacatg 43068995  T
Q  273 caaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
     ||||| |||| |||||||||||||||||||||||| ||| ||||||||    
T  43068996 taaataagtctcggaattttatttagcacactattgccggattcatctc 43069044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 3155791 - 3155647
Alignment:
Q  161 ccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaa 260  Q
    |||| ||||| | ||||||||||  ||||||||||||||||  | |||| | | ||||| ||||| ||| ||| |||||||||||||||  |||||||||    
T  3155791 ccgggcggtcgctcgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacatttataaaaagaaaaatttggacaatctgaa 3155692  T
Q  261 aattctcacacgcaaataggtcttggaattttatttagcacacta 305  Q
    |||| |||||||||||||| |||||||||||||||||||||||||    
T  3155691 aattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 28801300 - 28801415
Alignment:
Q  167 ggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaattt--gagcaatctgaaaatt 264  Q
    |||| ||| |||||||| |||||||||||||||||| || ||| ||| ||| | ||||| ||||||||||||||||||||||  ||  ||| ||||||||    
T  28801300 ggtcgccctggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaatttgggaaaaatatgaaaatt 28801399  T
Q  265 ctcacacgcaaatagg 280  Q
    ||||||||||||||||    
T  28801400 ctcacacgcaaatagg 28801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 26543952 - 26543903
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgat 183  Q
    |||||||||||| || |||||||||| |||| ||||| ||||||||||||    
T  26543952 caggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgat 26543903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 134 - 319
Target Start/End: Complemental strand, 50205264 - 50205079
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| | |||||||  |||| ||||| |||| ||||||| |||||||||||||||||| || ||| ||| ||| ||||||| |||||||    
T  50205264 caggggcggtttcaccgtccggcgatcccgggcggtcgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacactta 50205165  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 319  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50205164 caaaaagaaaaaattggacaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatc 50205079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 137 - 321
Target Start/End: Complemental strand, 43143768 - 43143584
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||||||||||| | ||| |||| |||| ||||| |||||||||||| |||||||||||||||||| | |||| ||| ||| ||||||| ||||||||||    
T  43143768 gggcggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaa 43143669  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  43143668 aaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctc 43143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 137 - 321
Target Start/End: Original strand, 48989311 - 48989495
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||| ||||||| ||||| ||||||||| |||||| ||||| ||||| ||||||||||||||||||||  |||  || ||||| ||||| ||||||||||    
T  48989311 gggcagtttcaccgcccgacgactccgggcggtcaaccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaa 48989410  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48989411 aaagaaaaatttgggcaatctgaaaattctcatacgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 48989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 134 - 321
Target Start/End: Complemental strand, 3293083 - 3292896
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||| | ||| |||| ||||| |||||||||||| |||||||||||| ||||| |  ||| ||| ||| ||||||| |||||||    
T  3293083 caggggcggtttcaccgcccagtgaccccgggcggtcgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacactta 3292984  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  3292983 caaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctc 3292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 134 - 321
Target Start/End: Complemental strand, 6690422 - 6690235
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| |||||||||| |||| ||||| |||||||||||| |||||||||||| ||||| |  ||| ||| ||| ||||||| |||||||    
T  6690422 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacactta 6690323  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||    
T  6690322 caaaaagaaaaatttgggcaaactgaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgacgggttcgtctc 6690235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 130 - 321
Target Start/End: Complemental strand, 30216933 - 30216742
Alignment:
Q  130 tgtacaggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaataca 229  Q
    |||| |||||||| ||||| | |||||||| |||| ||||| |||||||||||| |||||||||||||||||| |  ||| ||| |||  |||||| |||    
T  30216933 tgtagaggggcggattcaccgtccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacaca 30216834  T
Q  230 cttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  30216833 cttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctc 30216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 166 - 321
Target Start/End: Original strand, 25930720 - 25930875
Alignment:
Q  166 cggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattc 265  Q
    ||||| ||||||||||||  ||||||||||||||||||| |||| ||| ||| | ||||| ||| ||||||||||||||||||| ||||| ||||||||     
T  25930720 cggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattg 25930819  T
Q  266 tcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25930820 tcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 25930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 321
Target Start/End: Complemental strand, 36382512 - 36382346
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||| ||||||||||||  ||||||||||||||||||| |||| | | ||||| ||||| ||| |||||||| ||||||||||  ||    
T  36382512 ggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaa-gaaaaatttggaca 36382414  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36382413 atctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 36382346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 140 - 309
Target Start/End: Complemental strand, 42333957 - 42333788
Alignment:
Q  140 cggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaa 239  Q
    ||||||||| | || ||||  |||| |||||  |||||||| || |||||||||||||||||| | |||| ||| ||| ||||||| |||||||||||||    
T  42333957 cggtttcaccgtccagcgatcccgggcggtcgtccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaa 42333858  T
Q  240 gaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattga 309  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  42333857 gaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 42333788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 155 - 321
Target Start/End: Original strand, 20129311 - 20129477
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||||||||||||||||||| ||||    
T  20129311 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaa 20129410  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||| | ||||||||    
T  20129411 tctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgacagtttcatctc 20129477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 176 - 318
Target Start/End: Complemental strand, 29319850 - 29319708
Alignment:
Q  176 ggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaa 275  Q
    |||||||| |||||||||||||||||| | |||| ||| ||  | ||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||    
T  29319850 ggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaaaaagaaaaatttgagcaatctgaaaattgtcacacacaa 29319751  T
Q  276 ataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    ||| |||||||||||||||||||||||||||||||||||||||    
T  29319750 ataagtcttggaattttatttagcacactattgacgggttcat 29319708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 132 - 321
Target Start/End: Complemental strand, 10353073 - 10352884
Alignment:
Q  132 tacaggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacact 231  Q
    ||||||||||||||||| | |||||||| || | ||||| ||||||||| || |||||||||||||||||| |  ||| | | ||||| ||||| ||| |    
T  10353073 tacaggggcggtttcaccgtccggcgacccctggcggtcgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatt 10352974  T
Q  232 tacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| | || ||| ||||||||    
T  10352973 tacaaaaggaaaaatttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacaccagtgtcggattcatctc 10352884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 136 - 321
Target Start/End: Original strand, 26448035 - 26448219
Alignment:
Q  136 ggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttaca 235  Q
    ||||||||||||| ||||||||||||||  || ||  |||| |||||| |||||||||||||||||||||  || ||| ||||| ||||| |||||||||    
T  26448035 ggggcggtttcaccgcccggcgactccgtgcgatcgtccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttaca 26448134  T
Q  236 aaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||| ||||||||| |||||||||||||||||| || ||||||||| | |||||||||||||||||||||||| ||| || |||||    
T  26448135 aaaa-aaaaatttgggcaatctgaaaattctcatacacaaataggtttcggaattttatttagcacactattggcggatttatctc 26448219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 172 - 321
Target Start/End: Original strand, 44156669 - 44156818
Alignment:
Q  172 cccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 271  Q
    ||||||||| |  |||||||||||||||||| |  ||| ||| ||| ||||||| |||||||||||||||||| ||||  |||||||||||||||| |||    
T  44156669 cccgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaatctgaaaattctctcac 44156768  T
Q  272 gcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44156769 gcaaataggtctcggaattttatttagcacactattgacgggttcatctc 44156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 137 - 321
Target Start/End: Complemental strand, 29996167 - 29995983
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||||||||||| ||||| |||  ||||||||||  |||| |||||| ||||||||||| |||||| | |||| | | ||||| ||||| ||| |||| |    
T  29996167 gggcggtttcaccgcccgacgatcccggacggtcgtccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacga 29996068  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||| ||||||||||||||||  ||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||    
T  29996067 aaagaaaaatttgggcaatctgaaaattcttgcacgcaaatagttctcggaattttattaagcacactattgacggattcatctc 29995983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 134 - 321
Target Start/End: Complemental strand, 28877437 - 28877250
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||||||| | |||  ||| |||  ||||| |  ||||| ||| |||||||||||||||||| |||||| | | |||  |||||| || ||||    
T  28877437 caggggcggtttcaccgtccgatgaccccgtgcggtcgcttgggctagatcgataatttttgcacattagattcaacctaaaagctaattaacacgctta 28877338  T
Q  234 caaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
     ||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  28877337 taaaaagaaaaatttgggaaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacactattgatgggttcatctc 28877250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 6235581 - 6235687
Alignment:
Q  215 aagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggt 314  Q
    ||||| ||||| ||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6235581 aagtccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggt 6235680  T
Q  315 tcatctc 321  Q
    |||||||    
T  6235681 tcatctc 6235687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 321
Target Start/End: Original strand, 13012189 - 13012355
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||||| |||||||||||||||||| |||||| | | |||   ||||| ||| ||| ||||||||||||||| ||||    
T  13012189 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 13012288  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  13012289 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 13012355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 189 - 321
Target Start/End: Original strand, 1817752 - 1817884
Alignment:
Q  189 atttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaa 288  Q
    |||||||||||||| || ||||||| ||||| ||||||||| ||| ||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacatttataaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctcggaa 1817851  T
Q  289 ttttatttagcacactattgacgggttcatctc 321  Q
    ||||||||| |||||||||| ||| ||||||||    
T  1817852 ttttatttaacacactattgtcggattcatctc 1817884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 155 - 321
Target Start/End: Complemental strand, 26439445 - 26439279
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||| | |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||| ||||||||||||||| ||||    
T  26439445 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 26439346  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||| ||||||| |||||||||||| ||||||||||  |||||||||||| | ||||||||    
T  26439345 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 26439279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 155 - 321
Target Start/End: Complemental strand, 34407450 - 34407284
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||| | |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||| ||||||||||||||| ||||    
T  34407450 gcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaa 34407351  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||| ||||||| |||||||||||| ||||||||||  |||||||||||| | ||||||||    
T  34407350 tctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 34407284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 318
Target Start/End: Original strand, 40529034 - 40529179
Alignment:
Q  173 ccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 272  Q
    |||| |||||| |||||||||||||||||||| |||| | | ||    ||||| ||| |||||||||||||||||||  |||| |||||||| ||||| |    
T  40529034 ccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttacaaaaagaaaaatttggacaatttgaaaattgtcacatg 40529133  T
Q  273 caaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40529134 caaataggtcttggaattttatttagcacactattgacgggttcat 40529179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 178 - 321
Target Start/End: Original strand, 35545977 - 35546120
Alignment:
Q  178 ctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaat 277  Q
    |||||| || ||||||||| ||| | |  ||| ||| ||| ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  35545977 ctcgatcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcacacgcaaat 35546076  T
Q  278 aggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
     |||||  |||||||||||||||||||||||| |||||||||||    
T  35546077 gggtctctgaattttatttagcacactattgatgggttcatctc 35546120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 155 - 321
Target Start/End: Original strand, 47500774 - 47500940
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||| | | |||   ||||| ||| |||  |||||||||||||| ||||    
T  47500774 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttatgaaaagaaaaatttgggcaa 47500873  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  47500874 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 47500940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 172 - 321
Target Start/End: Original strand, 43355922 - 43356071
Alignment:
Q  172 cccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 271  Q
    |||||||||| | |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||| ||||||||||||||| |||||||||||||| ||||||    
T  43355922 cccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtcacac 43356021  T
Q  272 gcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    | |||||||||||| ||||||||||  |||||||||||| | ||||||||    
T  43356022 gtaaataggtcttgaaattttatttgacacactattgacagtttcatctc 43356071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 321
Target Start/End: Complemental strand, 17511377 - 17511233
Alignment:
Q  178 ctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaat 277  Q
    |||||| |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||||||||||||||||||| ||||| |||||||| | ||||||||||    
T  17511377 ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgttacacgcaaat 17511278  T
Q  278 aggtcttgg-aattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||| |||||||||||||||| ||||||  ||||||||||    
T  17511277 aggtcttggaaattttatttagcacattattgatcggttcatctc 17511233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 133 - 321
Target Start/End: Complemental strand, 30077818 - 30077631
Alignment:
Q  133 acaggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactt 232  Q
    |||||||||||||||| ||||| ||||  ||| ||||| ||| ||||| || ||||| |||||||||||| |  ||| | | ||||  ||||| ||| ||    
T  30077818 acaggggcggtttcaccgcccg-cgacctcgggcggtcgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacattt 30077720  T
Q  233 acaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||  ||||||||||||| | |||| ||||||||||||| ||||||||||||||||||| || ||| ||||||||    
T  30077719 acaaaaagaaaaatttggacaatctgaaaatttttacacacaaataggtcttgaaattttatttagcacactagtgccggattcatctc 30077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 13392970 - 13392893
Alignment:
Q  232 tacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattga 309  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  13392970 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 13396109 - 13396032
Alignment:
Q  232 tacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattga 309  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  13396109 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 30109945 - 30110084
Alignment:
Q  143 tttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaa 242  Q
    |||||| ||||| |||| |||||||||| ||||| |||||| |||||||||||||||||| |  ||| ||  ||| | ||||| ||||||||||||||||    
T  30109945 tttcaccgcccgacgaccccggacggtcgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaa 30110044  T
Q  243 aaatttgagc--aatctgaaaattctcacacgcaaatagg 280  Q
    |||||||  |  ||| |||||| |||||||||||||||||    
T  30110045 aaatttggacaaaatatgaaaaatctcacacgcaaatagg 30110084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 49908839 - 49908782
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatt 191  Q
    ||||||||||||||| |||||||||| |||| ||||| |||||||||||| |||||||    
T  49908839 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 45194194 - 45194266
Alignment:
Q  172 cccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaa 244  Q
    ||||| ||||||  ||||||||||||||||||| |||| ||| ||||| ||||| ||||||||||||| ||||    
T  45194194 cccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttacaaaaaaaaaa 45194266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 280
Target Start/End: Original strand, 48129985 - 48130087
Alignment:
Q  173 ccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 272  Q
    ||||||||||| ||||||||||||| |||| |  ||| ||| |||   ||||| ||||||||||||||||||||||| |     |||||| |||||||||    
T  48129985 ccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttacaaaaagaaaaatttggg-----tgaaaactctcacacg 48130079  T
Q  273 caaatagg 280  Q
    ||||||||    
T  48130080 caaatagg 48130087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 30110108 - 30110142
Alignment:
Q  287 aattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||||||||||||||||||||    
T  30110108 aattttatttagcacactattgacgggttcatctc 30110142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 48130111 - 48130145
Alignment:
Q  287 aattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||||||||||||||||||||    
T  48130111 aattttatttagcacactattgacgggttcatctc 48130145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 5517551 - 5517494
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatt 191  Q
    ||||||||||||||| |||||||||| |||| ||||| || ||||||||| |||||||    
T  5517551 caggggcggtttcaccgcccggcgaccccgggcggtcgcctgggctcgatcgataatt 5517494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 6254569 - 6254637
Alignment:
Q  179 tcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatt 247  Q
    ||||| ||||||||||||||||||||  ||| ||| ||| ||||||| |||||| |||||| |||||||    
T  6254569 tcgatcgataatttttgcacattaaacccaacccaaaagacaattaacacacttgcaaaaaaaaaaatt 6254637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 13393057 - 13392989
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacatta 202  Q
    ||||||||||||||| |||| ||||| |||||||||| ||||||||| || ||| | ||||||| ||||    
T  13393057 caggggcggtttcaccgcccagcgaccccggacggtcgcccgggctcaatcgatgacttttgcatatta 13392989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 13396196 - 13396128
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacatta 202  Q
    ||||||||||||||| |||| ||||| |||||||||| ||||||||| || ||| | ||||||| ||||    
T  13396196 caggggcggtttcaccgcccagcgaccccggacggtcgcccgggctcaatcgatgacttttgcatatta 13396128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 7769311 - 7769369
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttg 195  Q
    |||||||||||| | |||||||| || | ||||| |||||||||||| |||||||||||    
T  7769311 gggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 133 - 320
Target Start/End: Original strand, 17445292 - 17445479
Alignment:
Q  133 acaggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactt 232  Q
    ||||||||||||||| ||||||||||| ||   ||||| |||||||| |||  |||||||||| |||||| || ||| ||| ||||||||||| ||||||    
T  17445292 acaggggcggtttcattgcccggcgaccccatgcggtcgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacactt 17445391  T
Q  233 acaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatct 320  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  17445392 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 137 - 321
Target Start/End: Original strand, 35907535 - 35907719
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||||||||||| ||||||||||  ||| ||||| |||||||| ||| |||||||||||||||||| |  ||| ||| ||| |||||| |||||||||||    
T  35907535 gggcggtttcaccgcccggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaa 35907634  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||    
T  35907635 aaagaaaattttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgagttcatctc 35907719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 137 - 321
Target Start/End: Original strand, 3828967 - 3829150
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    |||||||||||   |||||| || |||||||||| | |||| ||||| ||||||||||||||||||||  ||| ||| ||||  ||||| ||||||||||    
T  3828967 gggcggtttcatcacccggcaaccccggacggtcgctcgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaa 3829066  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3829067 aaagaaaaatttgggcaatctgaaaattttcatacgcaaataggtc-tggaattttatttagcacactattgacgggttcatctc 3829150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 137 - 321
Target Start/End: Complemental strand, 321561 - 321377
Alignment:
Q  137 gggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaa 236  Q
    ||||||||||||  |||||||| | ||| |||||  ||||||||||| |||||||||||  ||||| || ||| ||| ||||| ||||| ||| ||||||    
T  321561 gggcggtttcaccacccggcgatttcgggcggtcgtccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaa 321462  T
Q  237 aaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||||| |||| ||||||||||||||||||    
T  321461 aaagaaaaatttgggcaatctgaaaattctcatatgcaaataggtctcggaattttatttaacacattattgacgggttcatctc 321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 154 - 321
Target Start/End: Complemental strand, 42311108 - 42310941
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| || |||| || |||||||||||| |||||||||||||||||| | |||| ||| ||| |  |||| ||| ||||||||||||||||||| |||    
T  42311108 ggcgaccccagacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaaaaagaaaaatttgggca 42311009  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||| || |||||||||||||||||||    
T  42311008 atctgaaaattgtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctc 42310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 318
Target Start/End: Original strand, 7433452 - 7433609
Alignment:
Q  161 ccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaa 260  Q
    |||| ||||| |||| |||||||  ||||||||||||||||| | |||| ||| ||| | ||||| ||| |||||||||||||| |||| ||||||| ||    
T  7433452 ccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaatctaaa 7433551  T
Q  261 aattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcat 318  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  7433552 aattgtcacacacaaataggtcttgaaattttatttagcacactattgacgggttcat 7433609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 155 - 321
Target Start/End: Original strand, 26144256 - 26144422
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||| | | |||   ||||| ||| ||| ||||||||||||||| ||||    
T  26144256 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 26144355  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  26144356 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 26144422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 321
Target Start/End: Complemental strand, 32982223 - 32982056
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||| | ||||| |||| |||||||||||||||||| |  ||| | | ||| | ||||| | | |||||||||||||||||||  ||    
T  32982223 ggcgaccccgggcggtcgcgcgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaagaaaaatttggaca 32982124  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||    
T  32982123 atctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgacagattcatctc 32982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 280
Target Start/End: Original strand, 33489667 - 33489815
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    |||||||||||||||  ||||||||| ||||||||||   |||| | | | ||||||||||| |||||| | |||| | | ||| | ||||| |||||||    
T  33489667 caggggcggtttcaccacccggcgaccccggacggtcgttcgggattgttcgataatttttgtacattagactcaaactaaaagcccattaacacactta 33489766  T
Q  234 caaaaagaaaaatttgagc--aatctgaaaattctcacacgcaaatagg 280  Q
    | |||||||||||||||||  ||||||||||||||||||||||||||||    
T  33489767 ctaaaagaaaaatttgagcaaaatctgaaaattctcacacgcaaatagg 33489815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 134 - 280
Target Start/End: Complemental strand, 41972461 - 41972314
Alignment:
Q  134 caggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactta 233  Q
    ||||||||||| ||| | || ||||| |||| ||||| || || |||||| |||||||||||||||||| || ||| | | ||| | ||||| |||||||    
T  41972461 caggggcggttccaccgtccagcgaccccgggcggtcgcctgg-ctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacactta 41972363  T
Q  234 caaaaagaaaaatttg--agcaatctgaaaattctcacacgcaaatagg 280  Q
    ||||||||||||||||  |  ||||||||||||||||||||||||||||    
T  41972362 caaaaagaaaaatttggaaaaaatctgaaaattctcacacgcaaatagg 41972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 33489839 - 33489873
Alignment:
Q  287 aattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||||||||||||||||||||    
T  33489839 aattttatttagcacactattgacgggttcatctc 33489873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 321
Target Start/End: Complemental strand, 41972290 - 41972256
Alignment:
Q  287 aattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||||||||||||||||||||    
T  41972290 aattttatttagcacactattgacgggttcatctc 41972256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 23313256 - 23313345
Alignment:
Q  172 cccgggctcgattgataattt-ttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaa 260  Q
    |||||||||||||||| |||| |||||||||| | ||||   | ||||  ||||| ||| ||||||||||||||||||| ||||||||||    
T  23313256 cccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacatttacaaaaagaaaaatttgggcaatctgaa 23313345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 31866958 - 31867014
Alignment:
Q  135 aggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatt 191  Q
    |||||||||||||| |||||||||| |||| ||||| |||||| ||||  |||||||    
T  31866958 aggggcggtttcaccgcccggcgaccccgggcggtcgcccgggttcgaccgataatt 31867014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 154 - 321
Target Start/End: Original strand, 5230 - 5397
Alignment:
Q  154 ggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagca 253  Q
    |||||| |||| ||||| ||||||||||||  ||||||||||||||||| |  ||||| | ||| ||||||| |||||||||||||||||| |||| |||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggca 5329  T
Q  254 atctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5330 atctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctc 5397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 133 - 321
Target Start/End: Original strand, 31459 - 31647
Alignment:
Q  133 acaggggcggtttcactgcccggcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacactt 232  Q
    |||||||||||||||  |||||||||| || ||||||| |||||||||||| ||||||||||||||| || |  ||| ||| ||| | ||||| ||||||    
T  31459 acaggggcggtttcatcgcccggcgaccccagacggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacactt 31558  T
Q  233 acaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||||| ||||||||||    
T  31559 acaaaaagaaaaatttggacaatctgaaaattctcactcgcaaataggtctagtaattttattttgcacactattgacaggttcatctc 31647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 173 - 321
Target Start/End: Original strand, 52944 - 53092
Alignment:
Q  173 ccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 272  Q
    ||||||||||| |||||||||||||||||| ||| || ||| ||| ||||||| ||| |||||||||||||||||||  ||||||||||||||||||| |    
T  52944 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatg 53043  T
Q  273 caaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53044 caaataggtctcggaattttatttagcacactattgacgggttcatctc 53092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 173 - 321
Target Start/End: Original strand, 17861 - 18009
Alignment:
Q  173 ccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacg 272  Q
    ||||||||||| |||||||||||||||||| | |||| ||| ||| | ||||| ||| ||||||||||||||||||| |||||||||||||| ||||| |    
T  17861 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacatg 17960  T
Q  273 caaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
     |||||||||||| |||||||||||||||||||||||| | ||||||||    
T  17961 taaataggtcttgaaattttatttagcacactattgacagtttcatctc 18009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 155 - 321
Target Start/End: Complemental strand, 480623 - 480457
Alignment:
Q  155 gcgactccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaa 254  Q
    ||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||| | | |||   ||||| ||| ||| ||||||||||||||| ||||    
T  480623 gcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaa 480524  T
Q  255 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  480523 tttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 480457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 321
Target Start/End: Original strand, 529 - 689
Alignment:
Q  161 ccggacggtcacccgggctcgattgataatttttgcacattaaattcaatccagaagtcaattaatacacttacaaaaagaaaaatttgagcaatctgaa 260  Q
    |||| ||||| |||||||||||| |||||||||||||||||| | |||| | | |||   ||||| ||| ||| ||||||||||||||| ||||| ||||    
T  529 ccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaa 628  T
Q  261 aattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctc 321  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  629 aattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctc 689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University