View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_high_50 (Length: 279)
Name: NF1362_high_50
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 269
Target Start/End: Complemental strand, 43537760 - 43537488
Alignment:
| Q |
5 |
atacatgtaattacatctttcatgtcgcaagttcagtacttatcacaaagtcgtgctcaattatatgagtagacaaaaccacaacataacataattatat |
104 |
Q |
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| T |
43537760 |
atacatgtaattacatctttcatgtcgcaagttcagtacttatcacaaagacgtgctcaattatatgagtagacaaaaccacaacataacataattatat |
43537661 |
T |
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| Q |
105 |
atatt--------ggacccaactagaagggtattttggtagttgtatccataaagctctaatcgcttaactggcctttatatagagttttgctccacatg |
196 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
43537660 |
atatatatatataggacccaactagaagggtattttggtagttgtatccataaagctctaacctcttaactggcctttatatagagttttgctccacatg |
43537561 |
T |
|
| Q |
197 |
attgttatatatccattccattttcatataatcccgcgattttcttcacaagcaagcctgtctcctgtctctg |
269 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
43537560 |
attgttatagatccattccattttcatataatcccgcgattttcttctcaagcaatactgtctcctgtttctg |
43537488 |
T |
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