View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_high_6 (Length: 595)

Name: NF1362_high_6
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_high_6
NF1362_high_6
[»] chr2 (27 HSPs)
chr2 (273-566)||(2412935-2413220)
chr2 (80-266)||(45418566-45418750)
chr2 (80-266)||(44084603-44084787)
chr2 (81-266)||(8147334-8147518)
chr2 (81-266)||(770977-771165)
chr2 (80-230)||(12756837-12756985)
chr2 (83-249)||(35962715-35962879)
chr2 (80-246)||(41251634-41251798)
chr2 (83-249)||(42439986-42440150)
chr2 (270-403)||(31758331-31758463)
chr2 (83-266)||(8059336-8059517)
chr2 (80-249)||(31581622-31581789)
chr2 (83-249)||(32127144-32127308)
chr2 (83-243)||(18981622-18981780)
chr2 (80-249)||(17445041-17445206)
chr2 (80-248)||(6403804-6403970)
chr2 (83-246)||(16405603-16405764)
chr2 (110-249)||(2958131-2958267)
chr2 (282-403)||(40200005-40200125)
chr2 (83-155)||(2285954-2286026)
chr2 (80-155)||(26162702-26162774)
chr2 (169-253)||(26237953-26238036)
chr2 (170-229)||(34905969-34906028)
chr2 (169-257)||(4555298-4555385)
chr2 (173-236)||(7072643-7072706)
chr2 (194-266)||(34523223-34523295)
chr2 (80-110)||(26238080-26238110)
[»] chr7 (27 HSPs)
chr7 (80-269)||(34389056-34389243)
chr7 (80-266)||(37002144-37002328)
chr7 (80-266)||(26624728-26624913)
chr7 (82-260)||(8867733-8867909)
chr7 (80-236)||(35090181-35090335)
chr7 (81-233)||(38638237-38638387)
chr7 (80-266)||(7002708-7002892)
chr7 (80-266)||(7048579-7048763)
chr7 (80-266)||(33685547-33685731)
chr7 (80-266)||(43184468-43184652)
chr7 (83-249)||(5555487-5555651)
chr7 (80-230)||(36658200-36658348)
chr7 (80-233)||(40920003-40920154)
chr7 (83-246)||(3114099-3114260)
chr7 (80-249)||(8394125-8394292)
chr7 (80-249)||(36630816-36630983)
chr7 (82-248)||(14777109-14777273)
chr7 (277-403)||(27954606-27954731)
chr7 (282-403)||(27951369-27951489)
chr7 (270-403)||(29864468-29864600)
chr7 (272-362)||(28958459-28958548)
chr7 (204-252)||(10876829-10876877)
chr7 (270-393)||(20403620-20403742)
chr7 (213-265)||(37966614-37966666)
chr7 (80-114)||(10868456-10868490)
chr7 (172-249)||(26502810-26502887)
chr7 (172-249)||(26589827-26589904)
[»] chr3 (22 HSPs)
chr3 (80-266)||(45182964-45183148)
chr3 (80-269)||(11018212-11018399)
chr3 (80-266)||(6930894-6931078)
chr3 (80-266)||(33040936-33041120)
chr3 (80-269)||(6503569-6503756)
chr3 (80-269)||(27935158-27935345)
chr3 (81-248)||(6269427-6269592)
chr3 (80-249)||(19390146-19390313)
chr3 (80-248)||(22968444-22968610)
chr3 (96-266)||(19565517-19565685)
chr3 (80-260)||(35514255-35514429)
chr3 (80-266)||(45335858-45336041)
chr3 (80-249)||(34084122-34084289)
chr3 (80-248)||(39771791-39771957)
chr3 (80-236)||(40081741-40081893)
chr3 (270-403)||(25805039-25805172)
chr3 (212-266)||(6890981-6891035)
chr3 (169-233)||(5135285-5135349)
chr3 (200-260)||(5354698-5354758)
chr3 (80-128)||(22922214-22922262)
chr3 (80-114)||(5135421-5135455)
chr3 (201-249)||(22922157-22922205)
[»] chr5 (23 HSPs)
chr5 (80-266)||(31680350-31680534)
chr5 (80-266)||(12278860-12279044)
chr5 (80-266)||(17332551-17332735)
chr5 (80-269)||(37254621-37254808)
chr5 (80-266)||(31501716-31501900)
chr5 (80-235)||(33430335-33430488)
chr5 (83-249)||(10033927-10034091)
chr5 (80-249)||(13817977-13818144)
chr5 (83-249)||(39657509-39657673)
chr5 (80-249)||(36293621-36293788)
chr5 (80-230)||(16155016-16155164)
chr5 (80-249)||(39434696-39434863)
chr5 (80-266)||(36291354-36291538)
chr5 (83-219)||(16333879-16334013)
chr5 (80-232)||(43068894-43069044)
chr5 (81-247)||(1776377-1776541)
chr5 (80-248)||(26283318-26283484)
chr5 (80-247)||(19985941-19986106)
chr5 (169-238)||(28801298-28801367)
chr5 (96-155)||(3155647-3155706)
chr5 (172-266)||(202622-202716)
chr5 (194-266)||(26543877-26543949)
chr5 (170-249)||(3155719-3155798)
[»] chr6 (13 HSPs)
chr6 (80-266)||(28996713-28996897)
chr6 (80-249)||(18339106-18339273)
chr6 (270-403)||(14354885-14355017)
chr6 (80-266)||(29743266-29743450)
chr6 (83-249)||(34948761-34948925)
chr6 (83-249)||(13837821-13837985)
chr6 (80-248)||(398618-398784)
chr6 (80-230)||(33229336-33229484)
chr6 (169-265)||(24697904-24698000)
chr6 (169-260)||(31028451-31028542)
chr6 (213-266)||(13647000-13647053)
chr6 (213-266)||(34385519-34385572)
chr6 (172-221)||(24072576-24072625)
[»] chr4 (45 HSPs)
chr4 (80-266)||(3292896-3293080)
chr4 (80-266)||(6690235-6690419)
chr4 (80-269)||(43143584-43143771)
chr4 (80-259)||(30216742-30216919)
chr4 (82-266)||(50205079-50205261)
chr4 (92-269)||(42333788-42333963)
chr4 (80-260)||(48989317-48989495)
chr4 (80-230)||(44156670-44156818)
chr4 (80-266)||(10352884-10353068)
chr4 (80-249)||(25930708-25930875)
chr4 (80-225)||(35545977-35546120)
chr4 (80-249)||(36382346-36382512)
chr4 (80-248)||(20129311-20129477)
chr4 (80-266)||(26448036-26448219)
chr4 (80-266)||(29995983-29996167)
chr4 (270-403)||(9417409-9417541)
chr4 (83-246)||(29319708-29319869)
chr4 (80-155)||(6235612-6235687)
chr4 (80-266)||(28877250-28877434)
chr4 (80-248)||(26439279-26439445)
chr4 (80-248)||(34407284-34407450)
chr4 (80-248)||(47500774-47500940)
chr4 (169-263)||(30109942-30110036)
chr4 (80-248)||(13012189-13012355)
chr4 (80-155)||(1817809-1817884)
chr4 (92-155)||(13392893-13392956)
chr4 (92-155)||(13396032-13396095)
chr4 (83-236)||(40529028-40529179)
chr4 (80-248)||(43355905-43356071)
chr4 (169-269)||(48129950-48130046)
chr4 (80-225)||(17511233-17511377)
chr4 (80-266)||(30077631-30077814)
chr4 (212-266)||(49908782-49908836)
chr4 (171-224)||(6254569-6254622)
chr4 (208-269)||(7769308-7769369)
chr4 (169-249)||(27363361-27363441)
chr4 (169-260)||(45194165-45194256)
chr4 (212-266)||(5517494-5517548)
chr4 (213-266)||(17554979-17555032)
chr4 (80-114)||(30110108-30110142)
chr4 (80-114)||(48130111-48130145)
chr4 (213-266)||(6212029-6212082)
chr4 (201-266)||(13392989-13393054)
chr4 (201-266)||(13396128-13396193)
chr4 (212-265)||(50720476-50720529)
[»] chr8 (17 HSPs)
chr8 (80-266)||(23402091-23402275)
chr8 (80-253)||(16788025-16788196)
chr8 (80-269)||(4403988-4404175)
chr8 (80-269)||(34136825-34137012)
chr8 (270-403)||(21692224-21692356)
chr8 (80-266)||(2729196-2729380)
chr8 (80-260)||(36408540-36408718)
chr8 (80-235)||(3648794-3648947)
chr8 (83-249)||(15838286-15838449)
chr8 (80-249)||(29728386-29728553)
chr8 (93-227)||(9877242-9877374)
chr8 (80-248)||(39914516-39914681)
chr8 (80-155)||(42231029-42231104)
chr8 (169-230)||(3435288-3435349)
chr8 (170-226)||(40470581-40470637)
chr8 (80-114)||(40470475-40470509)
chr8 (174-257)||(10397132-10397215)
[»] scaffold0502 (1 HSPs)
scaffold0502 (80-249)||(5230-5397)
[»] chr1 (17 HSPs)
chr1 (80-269)||(35907532-35907719)
chr1 (81-266)||(17445296-17445479)
chr1 (80-266)||(321377-321561)
chr1 (80-266)||(3828967-3829150)
chr1 (489-566)||(41507887-41507964)
chr1 (83-245)||(7433449-7433609)
chr1 (80-230)||(42310941-42311089)
chr1 (80-248)||(26144256-26144422)
chr1 (80-249)||(32982056-32982223)
chr1 (169-266)||(41972362-41972458)
chr1 (169-266)||(33489670-33489767)
chr1 (213-276)||(44352614-44352677)
chr1 (212-266)||(31866960-31867014)
chr1 (80-114)||(33489839-33489873)
chr1 (172-234)||(35951435-35951497)
chr1 (80-114)||(41972256-41972290)
chr1 (184-266)||(48901207-48901288)
[»] scaffold0154 (1 HSPs)
scaffold0154 (80-266)||(31463-31647)
[»] scaffold0041 (1 HSPs)
scaffold0041 (80-233)||(52941-53092)
[»] scaffold0069 (1 HSPs)
scaffold0069 (80-249)||(17842-18009)
[»] scaffold0002 (1 HSPs)
scaffold0002 (80-248)||(480457-480623)
[»] scaffold2142 (1 HSPs)
scaffold2142 (80-248)||(523-689)
[»] scaffold0018 (1 HSPs)
scaffold0018 (489-565)||(159349-159424)
[»] scaffold0769 (1 HSPs)
scaffold0769 (194-266)||(1260-1332)
[»] scaffold0012 (1 HSPs)
scaffold0012 (194-256)||(194021-194083)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 273 - 566
Target Start/End: Original strand, 2412935 - 2413220
Alignment:
Q  273 tgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatacttaatc 372  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| || |||||||| ||| |||    
T  2412935 tgaatcttgtcatgaatcttcgttttttcttccattttt-gcaaggctattataaaagtaagtagctaaatatatcctttagggttagagatgcttgatc 2413033  T
Q  373 aaattaatatctactctttttgatacttaaaaattaaatatagaatcatatagaatacacacaaactaatgatgtgagagataccggattgagccaagtt 472  Q
    || |||||||  ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2413034 aagttaatatgaactctttttgatacttaa-------atatagaatcatatagaatacacacaaactaatgatgtgagagataccggattgagccaagtt 2413126  T
Q  473 ataaacattattagttatgcttttgtcaaaacatcaactgtttaagagttatgatgtgagagataccggcccttggtttttgtaatgttaacaa 566  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2413127 ataaacattattagttatgcttttgtctaaacatcaactgtttaagagttatgatgtgagagataccggccattggtttttgtaatgttaacaa 2413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 45418750 - 45418566
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  45418750 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 45418653  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  45418652 aattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45418566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 44084603 - 44084787
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||             |||||||||||    
T  44084603 gagatgaacccgtcaatagtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 44084700  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||   |||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| |||||    
T  44084701 aatgaacttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgccc 44084787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 81 - 266
Target Start/End: Complemental strand, 8147518 - 8147334
Alignment:
Q  81 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaatttt-cagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||             |||||||||||    
T  8147518 agatgaacccgtcaatagtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttcttttt--gtaagtgtgtt 8147421  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||| ||||||  |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  8147420 aattgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 8147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 81 - 266
Target Start/End: Complemental strand, 771165 - 770977
Alignment:
Q  81 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtta 180  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||             ||||||||||||    
T  771165 agatgaacccgtcaataatgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtta 771068  T
Q  181 attggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccgg-----ggtcgccgggcggtgaaatcgccc 266  Q
    || ||||||| | ||||||||||||||||||| ||||||||||||||||| ||||| |||||     |||||||||||||||||| |||||    
T  771067 atgggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgccc 770977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 12756837 - 12756985
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||             |||||||||||    
T  12756837 gagatgaacccgtcaatagtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaa--tttttctttttgtaagtgtgtt 12756934  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccgg 230  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| |||||    
T  12756935 aattggcttttgggttgggtctaatgcgcaaaaattatcgatcgaacccgg 12756985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 35962879 - 35962715
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||             |||| |||||||||    
T  35962879 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaa--attttctttttgtaaatgtgttaat 35962782  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
      |||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  35962781 aagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgcc 35962715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 80 - 246
Target Start/End: Original strand, 41251634 - 41251798
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||             |||| ||||||    
T  41251634 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgtt 41251731  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtc 246  Q
    ||| ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  41251732 aatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 42440150 - 42439986
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    ||||| |||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||             |||| |||||||||    
T  42440150 atgaatccgtcaatagtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgttaat 42440053  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
     ||||||||| ||  ||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  42440052 gggcttttgggtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 42439986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 270 - 403
Target Start/End: Original strand, 31758331 - 31758463
Alignment:
Q  270 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 369  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||||| ||| ||||||| ||| ||||| ||||||||||| ||||||||||||     
T  31758331 tcatgaatcttgtcatgaatcttcatcttttcttccatttt-tgcaaggctactatgaaagtaaatagctaaatctatcctttggggttagagatacttg 31758429  T
Q  370 atcaaattaatatctactctttttgatacttaaa 403  Q
    ||||| ||||||| |||||||||| |||||||||    
T  31758430 atcaagttaatatgtactcttttttatacttaaa 31758463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 83 - 266
Target Start/End: Original strand, 8059336 - 8059517
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||             ||||||||||||||    
T  8059336 atgaacccgtcaattgtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttcttttt--gtaagtgtgttaat 8059433  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||||||||| |||  ||||||||||||||||||||||| ||||| || ||| |  ||||||||| |||||||||||| |||||    
T  8059434 tggcttttgggttgactctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaaccgccc 8059517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 31581622 - 31581789
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||             |||| ||||||    
T  31581622 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgtt 31581719  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| |||||||||  || ||||||| |||||||| ||||| ||||||| || ||||| |||| |||||||    
T  31581720 aatgggcttttgggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgcc 31581789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 32127144 - 32127308
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |||             |||| |||||||||    
T  32127144 atgaacccgtcaatagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaa--tttttctttttgtaaatgtgttaat 32127241  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
      |||||||| | | || ||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  32127242 gagcttttgggtcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 32127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 83 - 243
Target Start/End: Complemental strand, 18981780 - 18981622
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||| | ||||||||||             |||| ||| |||||    
T  18981780 atgaacccgtcaacagtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaa--tttttctttttgtaaatgttttaat 18981683  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggg 243  Q
     | ||||||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  18981682 ggacttttgggttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgcccggg 18981622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 17445041 - 17445206
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||             |||| ||||||    
T  17445041 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgtt 17445138  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| ||||||||| ||| |||||  |||||||||||||||||||||| ||| ||||| |||| |||||||    
T  17445139 aatgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgcc 17445206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 6403804 - 6403970
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||              ||| ||||||    
T  6403804 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta--taaatgtgtt 6403901  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    |||   ||||| | ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  6403902 aatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 6403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 83 - 246
Target Start/End: Complemental strand, 16405764 - 16405603
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||              ||| |||||||||    
T  16405764 atgaacccgtcaatagtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttcttttta--taaatgtgttaat 16405667  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtc 246  Q
      |||||||| ||| |||||| ||||||||||||||||| |||||||| ||||| ||| |||||    
T  16405666 gagcttttgggttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtc 16405603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 110 - 249
Target Start/End: Original strand, 2958131 - 2958267
Alignment:
Q  110 aaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaattggcttttggattgggtctaatgtgca 209  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||             |||| ||||||||| ||||||||| ||| ||||||||||||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctcttt--gtaaatgtgttaatgggcttttgggttgagtctaatgtgca 2958228  T
Q  210 aaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| ||||||||||||||||||||||| ||||||||||||    
T  2958229 aaa-ttatcgatcgagcccggacgaccgcccggggtcgcc 2958267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 282 - 403
Target Start/End: Original strand, 40200005 - 40200125
Alignment:
Q  282 tcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatacttaatcaaattaata 381  Q
    ||||||||||| || ||||||||||||||  ||||||||| |||  || ||| ||| ||||| ||||||||||| |||||||||||| ||||| ||| ||    
T  40200005 tcatgaatcttcatattttcttccattttc-gcaaggctactatgtaaataagtagctaaatctatcctttggggttagagatacttgatcaagttagta 40200103  T
Q  382 tctactctttttgatacttaaa 403  Q
    | ||||||||||||||||||||    
T  40200104 tgtactctttttgatacttaaa 40200125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 2286026 - 2285954
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 155  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||    
T  2286026 atgaacacgtcaatagtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaa 2285954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 26162702 - 26162774
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 155  Q
    |||||||||||||||||| ||||||||||||   ||||||||||||||| || |||||||||| ||||||||||||    
T  26162702 gagatgaacccgtcaataatgtgctaaataa---tccgagacctatttgtgtttgagaatttttagattgcccaaa 26162774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 26238036 - 26237953
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggc 253  Q
    |||||||||||||| | ||||||| |||  |||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  26238036 gtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaat-atcgatcgagcccgggcgaccgcccggggtcgccgggc 26237953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 34906028 - 34905969
Alignment:
Q  170 taagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccg 229  Q
    ||||||||||||| ||||||||| || ||  |||||||||||||||||||||||||||||    
T  34906028 taagtgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccg 34905969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 4555298 - 4555385
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtg 257  Q
    |||||||||||||   |||||||| |||||| | ||||||||||||||||||||||| || | ||||| |||| | |||||||||||||    
T  4555298 gtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcgatcgagtccag-cgaccgcccgagatcgccgggcggtg 4555385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 7072643 - 7072706
Alignment:
Q  173 gtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgacc 236  Q
    |||||||||| ||||||||| ||| || ||||||  |||||||||||||||||||||| |||||    
T  7072643 gtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgacc 7072706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 34523295 - 34523223
Alignment:
Q  194 ttgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||| ||||||||   ||||||  |||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  34523295 ttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 34523223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 110
Target Start/End: Complemental strand, 26238110 - 26238080
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataa 110  Q
    |||||||||||||||||||||||||||||||    
T  26238110 gagatgaacccgtcaatagtgtgctaaataa 26238080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 80 - 269
Target Start/End: Original strand, 34389056 - 34389243
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  34389056 gagatgaacccgtcgataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 34389153  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  34389154 aattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaatcgcccatg 34389243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 37002144 - 37002328
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  37002144 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 37002241  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| |||||    
T  37002242 aattgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgccc 37002328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 26624913 - 26624728
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  26624913 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 26624816  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcg-atcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||  ||||||||||||||||||| |||||||||||||| ||||||||| | ||||| |||||||| |||||||||||||| |||||    
T  26624815 aattaacttttggattgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgccc 26624728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 82 - 260
Target Start/End: Original strand, 8867733 - 8867909
Alignment:
Q  82 gatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaa 181  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||             |||| ||| ||||    
T  8867733 gatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttcttttt--gtaaatgtattaa 8867830  T
Q  182 ttggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 260  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  8867831 ttggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaa 8867909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 35090335 - 35090181
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||             |||||||||||    
T  35090335 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaa--tttttctttttgtaagtgtgtt 35090238  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgacc 236  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||    
T  35090237 aattggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgacc 35090181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 38638237 - 38638387
Alignment:
Q  81 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtta 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||    
T  38638237 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtta 38638334  T
Q  181 attggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacg 233  Q
    |||| ||||||| |||| |||||||||||||||||||| ||||||| ||||||    
T  38638335 attgacttttgggttggatctaatgtgcaaaaattatcaatcgagctcggacg 38638387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 7002892 - 7002708
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||             ||| |||||||    
T  7002892 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaa--tttttatttttgtatgtgtgtt 7002795  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| |||||| ||||||  ||||||  |||||||||||||| ||||| | ||||||||||||||||||||| |||||    
T  7002794 aattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7002708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 7048763 - 7048579
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||             ||| |||||||    
T  7048763 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaa--tttttatttttgtatgtgtgtt 7048666  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| |||||| ||||||  ||||||  |||||||||||||| ||||| | ||||||||||||||||||||| |||||    
T  7048665 aattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7048579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 33685731 - 33685547
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||| |||||||||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||             |||||||||||    
T  33685731 gagataaacccgtcaatagtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 33685634  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||| ||||||||| |||||| |||||||||||||||||||||||||||||  ||||  || |||||||||||||||||||| |||||    
T  33685633 aatgggcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgccc 33685547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 43184468 - 43184652
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||             |||||| ||||    
T  43184468 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtatgtt 43184565  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| ||  |||| ||| | |||||||||||||||||||||  ||||| |||||  |||||||||||||||| |||||    
T  43184566 aattggcttttgggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgccc 43184652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 5555651 - 5555487
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||             |||| || ||||||    
T  5555651 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgcgttaat 5555554  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
     ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  5555553 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 5555487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 36658348 - 36658200
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             || ||| ||||    
T  36658348 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttatttttgttagtatgtt 36658251  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccgg 230  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||| ||||    
T  36658250 aattggcttttcggttgggtccaatgtgcaaaaattatcgatcgagtccgg 36658200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 40920003 - 40920154
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||             |||| ||||||    
T  40920003 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaa--tttttctttttgtaaatgtgtt 40920100  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacg 233  Q
    ||||||||||||| ||   |||||||||||||||||||||||||||||||||||    
T  40920101 aattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccggacg 40920154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 3114099 - 3114260
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||             |||| |||||||||    
T  3114099 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgttaat 3114196  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtc 246  Q
     ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||  ||||||||    
T  3114197 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtc 3114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 8394292 - 8394125
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||             |||| ||||||    
T  8394292 gagataaacccgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaa--tttttccttttgtaaatgtgtt 8394195  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| | ||||| | ||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  8394194 aatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 36630983 - 36630816
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||             |||| ||||||    
T  36630983 gagatgaacccgtcaatagtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgtt 36630886  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| | ||||| | ||| || |||||||||||||||||||||||||||||| |||||  |||||||||||    
T  36630885 aatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 82 - 248
Target Start/End: Original strand, 14777109 - 14777273
Alignment:
Q  82 gatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaa 181  Q
    |||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||             |||| ||||||||    
T  14777109 gatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgttaa 14777206  T
Q  182 ttggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    |  |||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  14777207 tgagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 277 - 403
Target Start/End: Complemental strand, 27954731 - 27954606
Alignment:
Q  277 tcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatacttaatcaaat 376  Q
    |||||||||||||||| || ||||||||||||||  ||||||||| ||| ||||||| ||| ||||| ||||||||||| |||||||||||| ||||| |    
T  27954731 tcttgtcatgaatcttcatcttttcttccattttc-gcaaggctactatgaaagtaagtagctaaatctatcctttggggttagagatacttgatcaagt 27954633  T
Q  377 taatatctactctttttgatacttaaa 403  Q
    |||||| ||||||||||||||||||||    
T  27954632 taatatgtactctttttgatacttaaa 27954606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 282 - 403
Target Start/End: Complemental strand, 27951489 - 27951369
Alignment:
Q  282 tcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatacttaatcaaattaata 381  Q
    ||||||||||| || ||||||||||||||| ||||||||| ||| ||||||| ||| ||||| ||||||||||| | |||||||||| ||||| ||||||    
T  27951489 tcatgaatcttcatcttttcttccattttt-gcaaggctactatgaaagtaagtagctaaatctatcctttggggtaagagatacttgatcaagttaata 27951391  T
Q  382 tctactctttttgatacttaaa 403  Q
    | ||||||||| ||||||||||    
T  27951390 tgtactcttttcgatacttaaa 27951369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 270 - 403
Target Start/End: Original strand, 29864468 - 29864600
Alignment:
Q  270 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 369  Q
    ||||| |||||||| |||||||| || |||||||||| ||||| |||||||| ||| ||||||| ||| ||||| ||||||||||  |||||| |||||     
T  29864468 tcatggatcttgtcttgaatcttcatcttttcttccacttttt-caaggctactatgaaagtaagtagctaaatctatcctttggagttagaggtacttg 29864566  T
Q  370 atcaaattaatatctactctttttgatacttaaa 403  Q
    |||||| |||||| || || ||||||||||||||    
T  29864567 atcaaactaatatgtattccttttgatacttaaa 29864600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 28958548 - 28958459
Alignment:
Q  272 atgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagag 362  Q
    ||||||||||||||||||||| || ||||||||||| |||||||| |||| ||| ||||||| ||| ||||| ||||||||| | ||||||    
T  28958548 atgaatcttgtcatgaatcttcatattttcttccat-ttttgcaaagctactatgaaagtaagtagctaaatctatcctttgaggttagag 28958459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 10876829 - 10876877
Alignment:
Q  204 tgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccggg 252  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgaccacacgggttcgccggg 10876877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 270 - 393
Target Start/End: Original strand, 20403620 - 20403742
Alignment:
Q  270 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 369  Q
    |||||||| |||||||||||||| |  |||||||||| |||| |||| |||| ||| ||||||| ||| ||||| | || |||||| |||||| |||||     
T  20403620 tcatgaatattgtcatgaatcttcaccttttcttcca-ttttcgcaaagctaatatgaaagtaagtagctaaatctctcatttgggtttagaggtacttg 20403718  T
Q  370 atcaaattaatatctactcttttt 393  Q
    |||||  |||||| || |||||||    
T  20403719 atcaagctaatatgtattcttttt 20403742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 37966614 - 37966666
Alignment:
Q  213 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcc 265  Q
    |||||||||||||| ||||||||| || | |||||||||||||||||| ||||    
T  37966614 attatcgatcgagctcggacgaccgcctgaggtcgccgggcggtgaaaccgcc 37966666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 10868456 - 10868490
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaatt 114  Q
    |||||||||||||||| ||||||||||||||||||    
T  10868456 gagatgaacccgtcaaaagtgtgctaaataaaatt 10868490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 26502887 - 26502810
Alignment:
Q  172 agtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||||||||||| ||||||||| |||||  |||| ||||||||   |||||||||||||| ||||  || |||||||||    
T  26502887 agtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgcc 26502810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 26589827 - 26589904
Alignment:
Q  172 agtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||||||||||| ||||||||| |||||  |||| ||||||||   |||||||||||||| ||||  || |||||||||    
T  26589827 agtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgcc 26589904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 45183148 - 45182964
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||             |||||||||||    
T  45183148 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 45183051  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  45183050 aattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 80 - 269
Target Start/End: Original strand, 11018212 - 11018399
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  11018212 gagatgaacccgtcaattgtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 11018309  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||    
T  11018310 aattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatg 11018399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 6930894 - 6931078
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||             |||| ||||||    
T  6930894 gagatgaactcgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaa--tttttctttttgtaaatgtgtt 6930991  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  6930992 aattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 6931078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 33041120 - 33040936
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||             |||||||||||    
T  33041120 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttcttttt--gtaagtgtgtt 33041023  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||| |||||||| ||||||||||| ||||||||||||| ||||||||||  ||||| ||||||||||||||||||||||| |||||    
T  33041022 aattagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgccc 33040936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 80 - 269
Target Start/End: Original strand, 6503569 - 6503756
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||  |||             ||||||||| |    
T  6503569 gagatgaacccatcaattgtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttcttttt--gtaagtgtgct 6503666  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    ||||||||||||| ||| ||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||    
T  6503667 aattggcttttgggttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatg 6503756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 80 - 269
Target Start/End: Complemental strand, 27935345 - 27935158
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||             |||||||||||    
T  27935345 gagatgaacccgtcaatagtatgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 27935248  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    |||  |||||||| |||||| |||||||||||||||||||||||||||||| ||||  ||| |||| ||| |||||||||| | ||||||    
T  27935247 aatgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgccaggcggtgaaaccacccatg 27935158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 6269427 - 6269592
Alignment:
Q  81 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtta 180  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||             |||| |||||||    
T  6269427 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgtta 6269524  T
Q  181 attggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    || ||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  6269525 atgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgc 6269592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 19390313 - 19390146
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||             |||| ||||||    
T  19390313 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgtt 19390216  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| | ||||| | ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  19390215 aatagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgcc 19390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 22968444 - 22968610
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | |||||||||||||||||||||||| | |||||||||| ||||||| |||||| ||||||||||||             |||| ||||||    
T  22968444 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttcttttt--gtaaatgtgtt 22968541  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    ||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22968542 aatgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 96 - 266
Target Start/End: Original strand, 19565517 - 19565685
Alignment:
Q  96 tagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaattggcttttggatt 195  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||             |||| ||||||||| |  |||| | ||    
T  19565517 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaa--tttttctttttgtaaatgtgttaatggattttttggtt 19565614  T
Q  196 gggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||||||||||||||||||||||||| || ||||| ||||| |||||| |||||||||||||||| |||||    
T  19565615 gggtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgccc 19565685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 80 - 260
Target Start/End: Complemental strand, 35514429 - 35514255
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||| |||||              |  |||||||    
T  35514429 gagatgaacccgtcaatagtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttctt------tttgtgtgtt 35514336  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 260  Q
    ||| | ||||||| |||| |||| | ||| |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  35514335 aatggacttttgggttggatctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgccgggcggtgaaa 35514255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 45336041 - 45335858
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| ||| || ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |             |||| ||||||    
T  45336041 gagatgaatccggcactagtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccaga--tttttctttttgtaaatgtgtt 45335944  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    || || ||||| | |||||||||||||| ||||||||||||| ||| |||| ||||| |||| |||||||||||||||||| |||||    
T  45335943 aa-tgactttttggttgggtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 45335858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 34084122 - 34084289
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||             |||| ||||||    
T  34084122 gagatgaacccatcaatagtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaa--tttttctttttgtaaatgtgtt 34084219  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| | ||||| | |||  | ||||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  34084220 aatggactttttggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcc 34084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 39771957 - 39771791
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||  |||||||||| | |||||||||| ||||||| |||||||||||||||||||              ||| ||||||    
T  39771957 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta--taaatgtgtt 39771860  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    ||| ||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  39771859 aatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 39771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 40081741 - 40081893
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||| |||||||| ||||||||||             |||| ||||||    
T  40081741 gagatgaacccgtcaatagtgtgctaaa-aaaaatccaagatctatttgcgtgtgacaattttcaaattgcccaaa--tttttctttttgtaaatgtgtt 40081837  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgacc 236  Q
    |||  |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||    
T  40081838 aatgagcttttgg-ttgagtctaatgttcaaaaattatcgatcgagcccgggcgacc 40081893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 270 - 403
Target Start/End: Original strand, 25805039 - 25805172
Alignment:
Q  270 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagtta-aatatatcctttgggattagagatactt 368  Q
    ||||||||||||||||||||||| || |||||||||| |||||||||||||| ||| ||||||  | | || ||| ||||||||||| |||||| ||||     
T  25805039 tcatgaatcttgtcatgaatcttcatcttttcttcca-tttttgcaaggctactatgaaagtatgtggctataatctatcctttggggttagaggtacta 25805137  T
Q  369 aatcaaattaatatctactctttttgatacttaaa 403  Q
     ||||| ||||||| |||||||||| || ||||||    
T  25805138 gatcaagttaatatgtactcttttttatccttaaa 25805172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 6891035 - 6890981
Alignment:
Q  212 aattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgccc 6890981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 5135349 - 5135285
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacg 233  Q
    ||||||||||||||  |||||| | ||||||||||||| ||||||| |||||||||||| |||||    
T  5135349 gtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgagcctggacg 5135285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 5354758 - 5354698
Alignment:
Q  200 ctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 260  Q
    ||||||||  |||||||  |||||||||||| ||||| |||||||||||||||||||||||    
T  5354758 ctaatgtgagaaaattaaggatcgagcccgggcgaccgcccggggtcgccgggcggtgaaa 5354698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 22922262 - 22922214
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttg 128  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||||||    
T  22922262 gagatgaacccgtcaatagtgtgttaaataaaattccaagatctatttg 22922214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 5135455 - 5135421
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaatt 114  Q
    |||||||||||||||||||||||||||||||||||    
T  5135455 gagatgaacccgtcaatagtgtgctaaataaaatt 5135421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 22922205 - 22922157
Alignment:
Q  201 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    |||||||||||||| ||||||||||||||  ||||| |||||| |||||    
T  22922205 taatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgcc 22922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 31680534 - 31680350
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||             |||||||||||    
T  31680534 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 31680437  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| |||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  31680436 aattggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31680350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 12278860 - 12279044
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  12278860 gagatgaacctgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 12278957  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||| |||||    
T  12278958 aattggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgccc 12279044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 17332551 - 17332735
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||             |||||||||||    
T  17332551 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 17332648  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||    
T  17332649 aattggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgccc 17332735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 80 - 269
Target Start/End: Complemental strand, 37254808 - 37254621
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  37254808 gagatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 37254711  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||| || ||||| || |||||||||| ||||||||| ||||||||    
T  37254710 aattgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgcccatg 37254621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 31501716 - 31501900
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||             |||||||||||    
T  31501716 gagatgaactcatcaatagtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 31501813  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||| |||||    
T  31501814 aattggcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgccc 31501900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 80 - 235
Target Start/End: Complemental strand, 33430488 - 33430335
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  33430488 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 33430391  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgac 235  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  33430390 aattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 10034091 - 10033927
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||             |||| |||||||||    
T  10034091 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgttaat 10033994  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
     ||||||||| ||| ||||||||||||||||||||||||||||||||| ||| |  |||||||||||    
T  10033993 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgcc 10033927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 13818144 - 13817977
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||             |||| ||||||    
T  13818144 gagatgagcccgtcaatagtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgtt 13818047  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| ||||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  13818046 aatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgcc 13817977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 39657509 - 39657673
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||             |||| |||||||||    
T  39657509 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgttaat 39657606  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
      |||||||| ||| ||||||||||||||||||||| |||||||||| ||||||  | |||||||||    
T  39657607 gagcttttgggttgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgcc 39657673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 36293621 - 36293788
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | || ||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||             |||| ||||||    
T  36293621 gagatgaaactgtaaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgtt 36293718  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| ||||||||| ||| ||||||||| |||||||||||||||||| |||||||||| | ||||||||||    
T  36293719 aatgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgcc 36293788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 16155164 - 16155016
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||              ||| ||||||    
T  16155164 gagatgaatctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttcttttta--taaatgtgtt 16155067  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccgg 230  Q
    ||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  16155066 aatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 16155016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 39434863 - 39434696
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | |||||||||||||||||||||||||  |||||||||| | ||||| |||||||||||||||||||             |||| ||||||    
T  39434863 gagatgaaactgtcaatagtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcatttt--gtaaatgtgtt 39434766  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| ||||||||| ||| |||||||||| |||||||||||||||||||||| ||||| ||| ||||||||    
T  39434765 aatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgcc 39434696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 36291538 - 36291354
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||| |||| | |||||| ||||||||||||             |||| ||||||    
T  36291538 gagatgaacccgtcaatagtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaa--tttttctttttgtaaatgtgtt 36291441  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||   ||||| | || | ||||||||||||||||||| |||||| ||||||||||| ||||| |||| |||||||||||| |||||    
T  36291440 aatgaacttttaggttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgccc 36291354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 16333879 - 16334013
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||             |||| |||||||||    
T  16333879 atgaatccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttcttttt--gtaaatgtgttaat 16333976  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcg 219  Q
     ||||||||| |||  |||||||||||||||||||||    
T  16333977 gggcttttgggttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 43069044 - 43068894
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||||||||||             |||| ||||||    
T  43069044 gagatgaatccggcaatagtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaa--tttttctttttgtaaatgtgtt 43068947  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggac 232  Q
    ||| | ||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  43068946 aatggacttttgggttgggtctaatgtgaaaaaattattgatcgagcccggac 43068894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 1776377 - 1776541
Alignment:
Q  81 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtta 180  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||             |||| |||||||    
T  1776377 agatgaacctgtcgatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaa--tttttctttttgtaaatgtgtta 1776474  T
Q  181 attggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcg 247  Q
    || | ||||| | |||  | |||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  1776475 atggactttttggttgactttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 26283318 - 26283484
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||              ||| ||||||    
T  26283318 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta--taaatgtgtt 26283415  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    |||   ||||| | ||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||    
T  26283416 aatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgc 26283484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 19986106 - 19985941
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||| |||||||||||| ||||||||||| | |||||||||||||||||| |||||| ||||| ||||||             |||| |||| |    
T  19986106 gagatgaacctgtcaatagtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaa--tttttctttttgtaaatgtgct 19986009  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcg 247  Q
    ||| | ||||||| |||  |||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  19986008 aatggacttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcg 19985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 28801367 - 28801298
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccac 238  Q
    |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| || |||||||    
T  28801367 gtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcgatcgagccagggcgaccac 28801298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 3155647 - 3155706
Alignment:
Q  96 tagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 155  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| |||||    
T  3155647 tagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaa 3155706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 202716 - 202622
Alignment:
Q  172 agtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||| ||||| ||||||||| || |  ||||||| || |||||||||||||||||||| ||||||||  |||||| |||||||||||| |||||    
T  202716 agtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccgccc 202622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 26543877 - 26543949
Alignment:
Q  194 ttgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||| ||||||||   ||||||  |||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  26543877 ttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 26543949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 3155719 - 3155798
Alignment:
Q  170 taagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| ||||||||| | ||||| | ||| ||| |||||||||||||||| |||||||||||  ||||| |||||| |||||    
T  3155719 taaatgtgttaatggacttttaggttgagtcgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgcc 3155798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 28996897 - 28996713
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  28996897 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 28996800  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||| ||||| | |||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||    
T  28996799 aattgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgccc 28996713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 18339273 - 18339106
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||             |||||||||||    
T  18339273 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaa--attttctttttgtaagtgtgtt 18339176  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  18339175 aattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 270 - 403
Target Start/End: Complemental strand, 14355017 - 14354885
Alignment:
Q  270 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 369  Q
    ||||||||||||||| ||||||| || ||||||||||||||| ||||||||| ||| ||||||| ||| ||||| ||||||||||| ||||||||||||     
T  14355017 tcatgaatcttgtcacgaatcttcatcttttcttccattttt-gcaaggctactatgaaagtaagtagctaaatctatcctttggggttagagatacttg 14354919  T
Q  370 atcaaattaatatctactctttttgatacttaaa 403  Q
    ||||| ||||||| ||||||||||||||||||||    
T  14354918 atcaagttaatatgtactctttttgatacttaaa 14354885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 29743450 - 29743266
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| ||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||             |||| ||||||    
T  29743450 gagatgaatccggcactagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaa--tttttctttctgtaaatgtgtt 29743353  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||   ||||| | |||||||||||||||||||||||||||| |||||||| | ||| |||||| ||| ||| |||||||| |||||    
T  29743352 aatgaactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgccc 29743266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 34948761 - 34948925
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||| | ||| ||||||| |||||| |||||||||||||||||||             |||| |||||||||    
T  34948761 atgaacccgtcaatagtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgttaat 34948858  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
     ||||||||| ||| |||||||||||||||||||||||||||||| || ||||| || |||||||||    
T  34948859 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgcc 34948925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 13837985 - 13837821
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||             |||| |||||| ||    
T  13837985 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgttgat 13837888  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
      |||||||| ||| ||||||||| ||||||||||||||||| ||||  ||| | ||||||||||||    
T  13837887 gtgcttttgggttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgcc 13837821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 398784 - 398618
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||              ||| ||||||    
T  398784 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttta--taaatgtgtt 398687  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    |||  |||||| | ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  398686 aatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 398618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 33229336 - 33229484
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| ||| ||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||||             | || ||||||    
T  33229336 gagatgaatccggcaatagtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaa--tttttctttttggaaatgtgtt 33229433  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccgg 230  Q
    ||| | ||||||| ||||||||||||| ||||||| |||||||||||||||    
T  33229434 aatggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgg 33229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 24697904 - 24698000
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcc 265  Q
    |||||||||||||| ||||||||| ||||| |||||||| ||||||||||||| |||||||| |||    |||||||||||||||||||||| ||||    
T  24697904 gtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccgcc 24698000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 31028451 - 31028542
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 260  Q
    |||| |||||||||  |||||| | |||| ||||||||||||||||||||||||||| |||| | ||| | |||||||||||||||||||||    
T  31028451 gtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccgggcggtgaaa 31028542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 13647053 - 13647000
Alignment:
Q  213 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgccc 13647000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 34385519 - 34385572
Alignment:
Q  213 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||||| || | ||| ||||||||||||||||||||||| |||||    
T  34385519 attatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgccc 34385572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 24072625 - 24072576
Alignment:
Q  172 agtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgat 221  Q
    ||||||||||| || |||||| || | |||||||||||||||||||||||    
T  24072625 agtgtgttaatgggtttttgggttcgatctaatgtgcaaaaattatcgat 24072576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 3292896 - 3293080
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  3292896 gagatgaactcgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 3292993  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| |||||    
T  3292994 aattggcttttgggttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgccc 3293080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 6690235 - 6690419
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||             |||||||||||    
T  6690235 gagacgaacccgtcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttcttttt--gtaagtgtgtt 6690332  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  6690333 aattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 6690419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 80 - 269
Target Start/End: Original strand, 43143584 - 43143771
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  43143584 gagatgaacccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 43143681  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||||||    
T  43143682 aattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgcccatg 43143771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 80 - 259
Target Start/End: Original strand, 30216742 - 30216919
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||             |||||||||||    
T  30216742 gagatgaacccgtcaatagtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 30216839  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaa 259  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  30216840 aattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaa 30216919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 82 - 266
Target Start/End: Original strand, 50205079 - 50205261
Alignment:
Q  82 gatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaa 181  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||              |||||||||||||    
T  50205079 gatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaa--ttttttctttttgtaagtgtgttaa 50205176  T
Q  182 ttggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||||| ||||||| |||||||| |||||    
T  50205177 ttggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgccc 50205261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 42333788 - 42333963
Alignment:
Q  92 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaattggcttttg 191  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||    
T  42333788 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttttt--gtaagtgtgttaattggcttttg 42333885  T
Q  192 gattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    | ||| |||||||||||||||||||||||| |||||||||||||| |||||| |||| || |||||||| || |||||    
T  42333886 ggttgagtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgctggacggtgaaaccgtccatg 42333963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 80 - 260
Target Start/End: Complemental strand, 48989495 - 48989317
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||             |||||||||||    
T  48989495 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 48989398  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 260  Q
    ||| | ||||||  |||||| |||||||||||||||||||||||| |||||  |||| ||||| |||| ||||||||||||    
T  48989397 aatggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgtcgggcggtgaaa 48989317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 44156818 - 44156670
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||             |||||||||||    
T  44156818 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaa--attttctttttgtaagtgtgtt 44156721  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccgg 230  Q
    ||||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  44156720 aattggcttttgggttgggtctaatgtgcaaaaattatcggttgagcccgg 44156670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 10352884 - 10353068
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| ||| || | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||             |||| ||||||    
T  10352884 gagatgaatccgacactggtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaa--tttttccttttgtaaatgtgtt 10352981  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||| | ||||| | |||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||| |||||    
T  10352982 aatggactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgccc 10353068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 25930875 - 25930708
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||             |||| ||||||    
T  25930875 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaa--tttttctttttgtaaatgtgtt 25930778  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| ||||||||| ||| || ||||||||||||||||| |||||||||||| ||||| ||| ||||||||    
T  25930777 aatgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgcc 25930708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 35546120 - 35545977
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||             |||||||||||    
T  35546120 gagatgaacccatcaatagtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaa--attttctttttgtaagtgtgtt 35546023  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgag 225  Q
    ||||||||||||| |||||||| ||| ||||||||| |||||||||    
T  35546022 aattggcttttgggttgggtctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 36382346 - 36382512
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||             |||| ||||||    
T  36382346 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaa---tttttcttttgtaaatgtgtt 36382442  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| | ||||| | ||| || ||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  36382443 aatggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 20129477 - 20129311
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||| |||||||||||  |||||||||| ||||||| |||||||||||||||||||             |||| ||||||    
T  20129477 gagatgaaactgtcaatagtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttt--gtaaatgtgtt 20129380  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    ||| ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  20129379 aatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 20129311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 26448219 - 26448036
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||| || ||| |||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||             |||||||||||    
T  26448219 gagataaatccgccaatagtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaa---ttttttttttgtaagtgtgtt 26448123  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||| | ||||||| || | | ||||||||||||||||||||||||| |||||||| | | ||| ||||||||||||||||| |||||    
T  26448122 aatggacttttgggttagatttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgccgggcggtgaaaccgccc 26448036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 29995983 - 29996167
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| |||||||||||||||| ||||||||||||||| |||||||||||  |||||||||||||||||||||             |||| ||||||    
T  29995983 gagatgaatccgtcaatagtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaa--tttttcttttcgtaaatgtgtt 29996080  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||| | ||||| | ||| ||||||||| |||||||||||||||||| ||||||||||  ||||| ||| |||||||||||| |||||    
T  29996081 aatggactttttggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgtcgggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 270 - 403
Target Start/End: Complemental strand, 9417541 - 9417409
Alignment:
Q  270 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 369  Q
    ||||||||||| ||||||||||| || ||| ||||||||||| ||||||||  ||| ||||||||||| ||||| |||||||| || ||||||||||||     
T  9417541 tcatgaatcttttcatgaatcttcatctttccttccattttt-gcaaggctgctatgaaagtaactagctaaatctatcctttagggttagagatacttt 9417443  T
Q  370 atcaaattaatatctactctttttgatacttaaa 403  Q
    ||||| ||||||| ||||||||||||||||||||    
T  9417442 atcaagttaatatgtactctttttgatacttaaa 9417409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 29319708 - 29319869
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||||||||| ||||             |||| |||||||||    
T  29319708 atgaacccgtcaatagtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaa--tttttctttttgtaaatgtgttaat 29319805  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtc 246  Q
     || |||||| ||| |||||||||||||||||||||||||||||| |||||||| || ||||||    
T  29319806 gggattttgggttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtc 29319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 6235687 - 6235612
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 155  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  6235687 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaa 6235612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 28877250 - 28877434
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||              |||| |||||    
T  28877250 gagatgaacccatcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttcttttta--taagcgtgtt 28877347  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||| |||||| | |||  |||||||||||||||||||||||| |||||   ||||| | |||||||  ||| |||||||| |||||    
T  28877348 aattagcttttaggttgaatctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcggacggtgaaaccgccc 28877434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 26439279 - 26439445
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||  |||||||||| | |||||||||| ||||||| |||||||||||||||||||              ||| ||||||    
T  26439279 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta--taaatgtgtt 26439376  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    ||| ||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  26439377 aatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 26439445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 34407284 - 34407450
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||  |||||||||| | |||||||||| ||||||| |||||||||||||||||||              ||| ||||||    
T  34407284 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta--taaatgtgtt 34407381  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    ||| ||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  34407382 aatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 34407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 47500940 - 47500774
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||              ||| ||||||    
T  47500940 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttca--taaatgtgtt 47500843  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    |||  |||||| | ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  47500842 aatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 47500774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 30110036 - 30109942
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcg 263  Q
    |||||||||||||| | |||| || |||||||||||||||||||||||||||||||| |||| |||||  ||||||||| |||||||||||||||    
T  30110036 gtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcgtcgggcggtgaaatcg 30109942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 13012355 - 13012189
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||              ||| ||||||    
T  13012355 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttta--taaatgtgtt 13012258  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    |||  |||||| | |||  |||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  13012257 aatgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 13012189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 1817884 - 1817809
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 155  Q
    |||||||| ||| |||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  1817884 gagatgaatccgacaatagtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaa 1817809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 13392893 - 13392956
Alignment:
Q  92 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 155  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  13392893 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaa 13392956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 13396032 - 13396095
Alignment:
Q  92 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 155  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  13396032 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaa 13396095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 83 - 236
Target Start/End: Complemental strand, 40529179 - 40529028
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| |||| |||||             |||| |||||||||    
T  40529179 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaa--tttttctttttgtaaatgtgttaat 40529082  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgacc 236  Q
      | |||| | ||| || ||||||||||||||||||||||||| ||||||||||    
T  40529081 gagtttttaggttgagtttaatgtgcaaaaattatcgatcgagtccggacgacc 40529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 43356071 - 43355905
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||  |||||||||| | |||||||||| ||||||| |||||||||||||||||||              ||| ||||||    
T  43356071 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta--taaatgtgtt 43355974  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    ||| ||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||  || ||||||||    
T  43355973 aatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgc 43355905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 48130046 - 48129950
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccat 268  Q
    ||||||||||||||  |||||||| ||||||||||| ||||||||||||||||||||||||| |||    ||| |||||||||||||| ||| |||||||    
T  48130046 gtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcga----ccgaggtcgccgggcggttaaaccgcccat 48129951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 17511233 - 17511377
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaatt-ccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgt 178  Q
    ||||||||||  |||||| |||||||||||||||| || |||||||||||||||| | |||||||| ||||||||||             |||| |||||    
T  17511233 gagatgaaccgatcaataatgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaa--tttttctttttgtaaatgtgt 17511330  T
Q  179 taattggcttttggattgggtctaatgtgcaaaaattatcgatcgag 225  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  17511331 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgag 17511377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 30077631 - 30077814
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| ||| || ||||||||||||||||||| | ||||||||||| |||| | ||||||||||||| |||||             |||| ||||||    
T  30077631 gagatgaatccggcactagtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaa--tttttctttttgtaaatgtgtt 30077728  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||   ||||| | ||||||||||||||||||| |||||||| ||||| || ||||| |||| ||||| |||||||||||| |||||    
T  30077729 aatgaactttttggttgggtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cgggcggtgaaaccgccc 30077814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 49908782 - 49908836
Alignment:
Q  212 aattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 49908836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 6254622 - 6254569
Alignment:
Q  171 aagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcga 224  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  6254622 aagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 7769369 - 7769308
Alignment:
Q  208 caaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    ||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatg 7769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 27363441 - 27363361
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    |||||||||||||| ||||||||| ||||| ||||| ||||||||   |||||||||||||| ||||| |||| |||||||    
T  27363441 gtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgcc 27363361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 45194256 - 45194165
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 260  Q
    |||||||||||||| | ||||||| ||| || ||||||||||||||||| ||||||| |||| | | | || ||||||| ||||||||||||    
T  45194256 gtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgtcgggcggtgaaa 45194165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 5517494 - 5517548
Alignment:
Q  212 aattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgccc 5517548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 17555032 - 17554979
Alignment:
Q  213 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||||| |||||    
T  17555032 attatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgccc 17554979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 30110142 - 30110108
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaatt 114  Q
    |||||||||||||||||||||||||||||||||||    
T  30110142 gagatgaacccgtcaatagtgtgctaaataaaatt 30110108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 48130145 - 48130111
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaatt 114  Q
    |||||||||||||||||||||||||||||||||||    
T  48130145 gagatgaacccgtcaatagtgtgctaaataaaatt 48130111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 6212029 - 6212082
Alignment:
Q  213 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||||||||||||| ||| ||||| |||| ||||||||| |||||||| |||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgccc 6212082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 13392989 - 13393054
Alignment:
Q  201 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||| ||||||| | |||||| |||||||| |||||  |||||||||| ||||||||||| |||||    
T  13392989 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13393054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 13396128 - 13396193
Alignment:
Q  201 taatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||| ||||||| | |||||| |||||||| |||||  |||||||||| ||||||||||| |||||    
T  13396128 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13396193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 50720476 - 50720529
Alignment:
Q  212 aattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcc 265  Q
    |||||| ||| |||||||| ||||| |||| |||||||||||||||||| ||||    
T  50720476 aattattgattgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcc 50720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 23402275 - 23402091
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  23402275 gagatgaaccagtcaatagtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttttt--gtaagtgtgtt 23402178  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  23402177 aattggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 23402091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 80 - 253
Target Start/End: Original strand, 16788025 - 16788196
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||             |||||||||||    
T  16788025 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttcttttt--gtaagtgtgtt 16788122  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggc 253  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  16788123 aattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggttgccgggc 16788196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 80 - 269
Target Start/End: Complemental strand, 4404175 - 4403988
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||             |||||| ||||    
T  4404175 gagatgaacccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaa--tttttctttttgtaagtatgtt 4404078  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||| | |||||| || |||||    
T  4404077 aattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgccggccagtgaaaccgtccatg 4403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 80 - 269
Target Start/End: Original strand, 34136825 - 34137012
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||             |||||||||||    
T  34136825 gagatgaacccatcaattgtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 34136922  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||| | |||||||| | ||||||    
T  34136923 aattgacttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccacccatg 34137012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 270 - 403
Target Start/End: Original strand, 21692224 - 21692356
Alignment:
Q  270 tcatgaatcttgtcatgaatcttgattttttcttccattttttgcaaggctattataaaagtaactagttaaatatatcctttgggattagagatactta 369  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||||| ||| ||||||| ||| ||||| ||||||||||| ||||||||||||     
T  21692224 tcatgaatcttgtcatgaatcttcatcttttcttccatttt-tgcaaggctactatgaaagtaagtagctaaatctatcctttggggttagagatacttg 21692322  T
Q  370 atcaaattaatatctactctttttgatacttaaa 403  Q
    ||||| ||||||| ||||||||||||||||||||    
T  21692323 atcaagttaatatgtactctttttgatacttaaa 21692356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 2729196 - 2729380
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| || |||||||||||||||||||||||  ||||||||||||||| ||||| |||||| |||||| |||              ||||||||||    
T  2729196 gagatgaatccatcaatagtgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttcttttta--taagtgtgtt 2729293  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||| |||||||||||||| | ||||||| |||||||||||||||||||||| || || ||||||||||||||||||||||| |||||    
T  2729294 aatgggcttttggattggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgccc 2729380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 80 - 260
Target Start/End: Complemental strand, 36408718 - 36408540
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| ||| |||||||||| |||||||||||| |||||||||| |||||| |||||||||| |||||| |||             |||| ||||||    
T  36408718 gagatgaatccggcaatagtgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttcttttt--gtaaatgtgtt 36408621  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaa 260  Q
    ||| | ||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  36408620 aatggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaa 36408540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 3648794 - 3648947
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||||||||             |||| ||||||    
T  3648794 gagatgaacccgtcaatagtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaa--attttctttttgtaaatgtgtt 3648891  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgac 235  Q
    ||| ||||||||| ||| |||||||||| |||||||||||||||||||||| ||||    
T  3648892 aatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgac 3648947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 15838449 - 15838286
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||             |||| |||||||||    
T  15838449 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaa---tttttcttttgtaaatgtgttaat 15838353  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
     | ||||| | ||| || |||||||||||||||||| |||||||||||  |||| ||||||||||||    
T  15838352 ggactttttggttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgcc 15838286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 29728386 - 29728553
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| | |||||||||||||||||||             |||| ||||||    
T  29728386 gagatgaacccgtcaatagtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaa--tttttctttttgtaaatgtgtt 29728483  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    |||  |||||||| ||| ||||||||||||||| ||||||||||||| ||| |||||  |||||||||||    
T  29728484 aatgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgcc 29728553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 93 - 227
Target Start/End: Complemental strand, 9877374 - 9877242
Alignment:
Q  93 caatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaattggcttttgg 192  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||             |||||||||||||||| |||||||    
T  9877374 caatagtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgttaattgacttttgg 9877277  T
Q  193 attgggtctaatgtgcaaaaattatcgatcgagcc 227  Q
     || |||||||||||||||||||||| ||||||||    
T  9877276 gttaggtctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 39914681 - 39914516
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||| | ||||| |||||||| ||||||||||              ||| ||||||    
T  39914681 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaatttttttttta---taaatgtgtt 39914585  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    |||  |||||| | ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  39914584 aatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 42231104 - 42231029
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 155  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||||||||    
T  42231104 gagatgaatccgtcaatagtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaa 42231029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 3435349 - 3435288
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccgg 230  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||    
T  3435349 gtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgg 3435288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 40470581 - 40470637
Alignment:
Q  170 taagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagc 226  Q
    ||||||||||||| | ||||||  |||||||||||||||||||||||||||||||||    
T  40470581 taagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 40470475 - 40470509
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaatt 114  Q
    |||||||||||||||||||||||||||||||||||    
T  40470475 gagatgaacccgtcaatagtgtgctaaataaaatt 40470509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 10397132 - 10397215
Alignment:
Q  174 tgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtg 257  Q
    ||||||||| ||||||||| |||   |||||||| | ||||||||||| |||||||| |||   ||||| ||||||||||||||    
T  10397132 tgtgttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcggtg 10397215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 5397 - 5230
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||             |||||||||||    
T  5397 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaa--attttctttttgtaagtgtgtt 5300  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  5299 aattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 80 - 269
Target Start/End: Complemental strand, 35907719 - 35907532
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||             ||||||||  |    
T  35907719 gagatgaactcgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttcttttt--gtaagtgtact 35907622  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatg 269  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||| ||||||||    
T  35907621 aattggcttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccatg 35907532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 81 - 266
Target Start/End: Complemental strand, 17445479 - 17445296
Alignment:
Q  81 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtta 180  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||    
T  17445479 agatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa--tttttctttttgtaagtgtgtta 17445382  T
Q  181 attggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||| ||||||| |||| |||||||| |||||||||| |||| ||||||| ||||| |  |||||||||||||  ||||| |||||    
T  17445381 attgacttttgggttggatctaatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgccgggcaatgaaaccgccc 17445296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 321377 - 321561
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||||||||||||||||             |||| ||||||    
T  321377 gagatgaacccgtcaataatgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaa--tttttctttttgtaactgtgtt 321474  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||| | ||||||| |||| |||||||  ||||||||||||||||||||||||||||| ||||   |||||||| ||||||| |||||    
T  321475 aatggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgccgggtggtgaaaccgccc 321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 3829150 - 3828967
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||             |||||||||||    
T  3829150 gagatgaacccgtcaatagtgtgctaaataaaattcc-agacctatttgcgtatgaaaattttcagattgcccaaa--tttttctttttgtaagtgtgtt 3829054  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||   ||||||| |||||| |||||||||||||||||||||||| ||||  |||||  ||||||| |||||| | ||||| |||||    
T  3829053 aatgaacttttgggttgggtttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccgggtgatgaaaccgccc 3828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 489 - 566
Target Start/End: Original strand, 41507887 - 41507964
Alignment:
Q  489 atgcttttgtcaaaacatcaactgtttaagagttatgatgtgagagataccggcccttggtttttgtaatgttaacaa 566  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41507887 atgcttttgtctaaacatcaactgtttaagacttatgatgtgagagataccggcccttggtttttgtaatgttaacaa 41507964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 83 - 245
Target Start/End: Complemental strand, 7433609 - 7433449
Alignment:
Q  83 atgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgttaat 182  Q
    |||||||||||||||||||||||||||||||| | ||||||||||| |||||| |||||| ||||||||||||             |||| |||||||||    
T  7433609 atgaacccgtcaatagtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaa--attttctttttgtaaatgtgttaat 7433512  T
Q  183 tggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggt 245  Q
     ||||||||| ||| |||||||||||||||||||| |||||||| ||| ||||| ||||||||    
T  7433511 gggcttttgggttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggt 7433449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 80 - 230
Target Start/End: Original strand, 42310941 - 42311089
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    ||||||||||||||||||| || |||||||||||| | |||| ||||||||||||| |||||||||||||||||||             |||| ||||||    
T  42310941 gagatgaacccgtcaatagcgtactaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaa--tttttctttttgtaaatgtgtt 42311038  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccgg 230  Q
    ||  ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  42311039 aacgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 42311089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 26144422 - 26144256
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||              ||| ||||||    
T  26144422 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttta--taaatgtgtt 26144325  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    |||  |||||| | ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  26144324 aatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 26144256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 32982056 - 32982223
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | |||||||| ||||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||             |||| | ||||    
T  32982056 gagatgaatctgtcaatagagtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaa--tttttctttttgtaaatatgtt 32982153  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| ||||||| | |||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||    
T  32982154 aatgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 41972362 - 41972458
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| || ||||| || |||||    
T  41972362 gtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcgatcgagccagg-cgaccgcccggggtcgctggacggtggaaccgccc 41972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 33489767 - 33489670
Alignment:
Q  169 gtaagtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||||||||||||| ||||||| | ||| ||||||||| ||||||||||||| | | |||| ||||||  |||||||||||||| ||||||| |||||    
T  33489767 gtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcgaacaatcccgaacgaccgtccggggtcgccgggtggtgaaaccgccc 33489670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 44352614 - 44352677
Alignment:
Q  213 attatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgcccatgtcatgaa 276  Q
    |||||||||||||||||| ||||| ||||||||||||||  ||||||| ||||| ||| |||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgcccctgttatgaa 44352677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 31867014 - 31866960
Alignment:
Q  212 aattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    |||||||| |||| ||||| ||||| ||||||||||||||||||||||| |||||    
T  31867014 aattatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31866960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 33489873 - 33489839
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaatt 114  Q
    |||||||||||||||||||||||||||||||||||    
T  33489873 gagatgaacccgtcaatagtgtgctaaataaaatt 33489839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 35951435 - 35951497
Alignment:
Q  172 agtgtgttaattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacga 234  Q
    ||||||||||| |||| |||| || |  ||||||| |||||||||||||||||||||||||||    
T  35951435 agtgtgttaatgggctattgggttcgacctaatgtacaaaaattatcgatcgagcccggacga 35951497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 41972256 - 41972290
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaatt 114  Q
    |||||||||||||||||||||||||||||||||||    
T  41972256 gagatgaacccgtcaatagtgtgctaaataaaatt 41972290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 48901207 - 48901288
Alignment:
Q  184 ggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||||||| ||||| |||||||||| |||||||||||||| ||||| | ||| ||||| || ||||||||||| || |||||    
T  48901207 ggcttttgggttgggcctaatgtgcataaattatcgatcgaccccgg-ccaccgcccggagttgccgggcggtggaaccgccc 48901288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 31647 - 31463
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||| ||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||||| |||||             |||||||||||    
T  31647 gagatgaacctgtcaatagtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttcttttt--gtaagtgtgtt 31550  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||  | |||||||||||||| ||||| |||||    
T  31549 aatgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgccc 31463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 53092 - 52941
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||             |||| ||||||    
T  53092 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaa--tttttctttttgtaaatgtgtt 52995  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacg 233  Q
    ||||||||||||| ||   |||||||||||||||||||||||||||||||||||    
T  52994 aattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccggacg 52941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 18009 - 17842
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | |||||||||||||||||||||||| | |||||||||| | ||||| |||||||||||||||||||             |||| ||||||    
T  18009 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttcttttt--gtaaatgtgtt 17912  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgcc 249  Q
    ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  17911 aatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgcc 17842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 480457 - 480623
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||              ||| ||||||    
T  480457 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttta--taaatgtgtt 480554  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    |||  |||||| | ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  480555 aatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 480623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 689 - 523
Alignment:
Q  80 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaannnnnnnnnnnnngtaagtgtgtt 179  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||| ||||||| |||||||| ||||||||||              ||| ||||||    
T  689 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttta--taaatgtgtt 592  T
Q  180 aattggcttttggattgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgc 248  Q
    |||  |||||| | ||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  591 aatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 489 - 565
Target Start/End: Original strand, 159349 - 159424
Alignment:
Q  489 atgcttttgtcaaaacatcaactgtttaagagttatgatgtgagagataccggcccttggtttttgtaatgttaaca 565  Q
    ||||||||||| || || ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  159349 atgcttttgtccaa-cagcaactgtttaagactcatgatgtgagagataccggcccttggtttttgtaatgttaaca 159424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 1332 - 1260
Alignment:
Q  194 ttgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggtgaaatcgccc 266  Q
    ||||| ||||||||   ||||||  |||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  1332 ttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 1260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 194083 - 194021
Alignment:
Q  194 ttgggtctaatgtgcaaaaattatcgatcgagcccggacgaccacccggggtcgccgggcggt 256  Q
    ||||| ||||||||   ||||||  |||||||||||| ||||| |||||||||||||||||||    
T  194083 ttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggt 194021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University