View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1362_high_62 (Length: 251)
Name: NF1362_high_62
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_high_62 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 30876252 - 30876009
Alignment:
| Q |
1 |
atgacacagatggacaaagcatcattacttggtgaagtagttagacacttgaaagagctaaaaaggaatgaaacacaagcatgtgaaggtttaatgatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30876252 |
atgacacagatggacaaagcatcattacttggtgaagtagttagacacttgaaagagctaaaaaggaatgaaacacaagcatgtgaaggtttaatgatac |
30876153 |
T |
|
| Q |
101 |
caaaggacaatgatgaaataagtgttgaagaacaagagggaggttggaacggttttcctttttcaattaaagcatcactatgttgtgaatatcaaccagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30876152 |
caaaggacaatgatgaaataagtgttgaagaacaagagggaggttggaacggttttcctttttcaattaaagcatcactatgttgtgaatatcaaccagg |
30876053 |
T |
|
| Q |
201 |
tttattgtctaatataagacaagccctagatgctcttcatctca |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30876052 |
tttattgtctaatataagacaagccctagatgctcttcatctca |
30876009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 39331883 - 39331652
Alignment:
| Q |
11 |
tggacaaagcatcattacttggtgaagtagttagacacttgaaagagctaaaaaggaatgaaacacaagcatgtgaaggtttaatgataccaaaggacaa |
110 |
Q |
| |
|
||||||||||||| ||||| | |||||| ||| ||| ||||||||||| |||| |||| | |||||||| ||||||| ||| | || ||||| |||| |
|
|
| T |
39331883 |
tggacaaagcatccttactagctgaagttattacacatttgaaagagctgaaaacaaatgcagcacaagcaagtgaagggttagttattccaaaagacag |
39331784 |
T |
|
| Q |
111 |
tgatgaaataagtgttgaagaacaagagggaggttggaacggttttcctttttcaattaaagcatcactatgttgtgaatatcaaccaggtttattgtct |
210 |
Q |
| |
|
|||||| ||||| |||||| |||||| || || | || ||||| |||| |||||||| ||||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
39331783 |
tgatgagataagagttgaatcacaagaaggtggattaaatggtttgccttattcaattagagcatcattatgttgtgaatataaacccggtttattgtct |
39331684 |
T |
|
| Q |
211 |
aatataagacaagccctagatgctcttcatct |
242 |
Q |
| |
|
|||||||| |||| || ||||| |||||||| |
|
|
| T |
39331683 |
gatataagaaaagcacttgatgcacttcatct |
39331652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 25574781 - 25574662
Alignment:
| Q |
11 |
tggacaaagcatcattacttggtgaagtagttagacacttgaaagagctaaaaaggaatgaaacacaagcatgtgaaggtttaatgataccaaaggacaa |
110 |
Q |
| |
|
|||||||| |||| ||| ||| |||||| ||| ||| ||||||||||| |||| |||| |||||||||| ||||||| ||||| || ||||| |||| |
|
|
| T |
25574781 |
tggacaaaacatccttatttgttgaagttattacacatttgaaagagctgaaaacaaatgcaacacaagcaagtgaagggttaattattccaaaagacag |
25574682 |
T |
|
| Q |
111 |
tgatgaaataagtgttgaag |
130 |
Q |
| |
|
|||||| ||||| ||||||| |
|
|
| T |
25574681 |
tgatgagataagagttgaag |
25574662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 32726517 - 32726427
Alignment:
| Q |
151 |
ggttttcctttttcaattaaagcatcactatgttgtgaatatcaaccaggtttattgtctaatataagacaagccctagatgctcttcatc |
241 |
Q |
| |
|
||||| |||| |||||||| |||||||||||||||| |||| |||| | |||||||||| |||||||| |||| || |||| ||||||| |
|
|
| T |
32726517 |
ggtttcccttattcaattagagcatcactatgttgtcaatacaaaccggatttattgtctgatataagaaaagcacttgatggacttcatc |
32726427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 44187381 - 44187291
Alignment:
| Q |
151 |
ggttttcctttttcaattaaagcatcactatgttgtgaatatcaaccaggtttattgtctaatataagacaagccctagatgctcttcatc |
241 |
Q |
| |
|
||||| |||| |||||||| |||||||||||||||| |||| |||| | |||||||||| |||||||| |||| || ||||| ||||||| |
|
|
| T |
44187381 |
ggtttcccttattcaattagagcatcactatgttgtcaatacaaaccggatttattgtctgatataagaaaagcacttgatgcacttcatc |
44187291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 5538591 - 5538420
Alignment:
| Q |
11 |
tggacaaagcatcattacttggtgaagtagttagacacttgaaagagctaaaaaggaatgaaacacaagcatgtgaaggtttaatgataccaaaggacaa |
110 |
Q |
| |
|
|||||||| |||| ||||| | |||||| ||| ||| ||||||||| | |||| |||| | | |||||| ||||||| ||||| || ||||| ||||| |
|
|
| T |
5538591 |
tggacaaaacatccttactagctgaagttattacacatttgaaagagttgaaaacaaatgcagcgcaagcaagtgaagggttaattattccaaaagacaa |
5538492 |
T |
|
| Q |
111 |
tgatgaaat-aagtgttgaagaacaagagggaggttggaacggttttcctttttcaattaaagcatcactat |
181 |
Q |
| |
|
|||||| || ||| |||||| |||||| || || | || ||||| |||| |||||||| ||||||||||| |
|
|
| T |
5538491 |
tgatgagataaagagttgaatcacaagaaggtggattaaatggtttcccttattcaattagagcatcactat |
5538420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University