View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_high_64 (Length: 240)

Name: NF1362_high_64
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_high_64
NF1362_high_64
[»] chr2 (10 HSPs)
chr2 (60-209)||(12258104-12258250)
chr2 (79-211)||(12235186-12235317)
chr2 (105-211)||(7542723-7542829)
chr2 (108-211)||(11999891-11999994)
chr2 (108-211)||(16657085-16657188)
chr2 (108-194)||(43625924-43626010)
chr2 (114-211)||(16661566-16661663)
chr2 (108-211)||(12244974-12245077)
chr2 (109-211)||(14703905-14704007)
chr2 (108-151)||(39373417-39373460)
[»] chr7 (19 HSPs)
chr7 (108-207)||(13333024-13333123)
chr7 (107-211)||(6790009-6790113)
chr7 (108-192)||(8585274-8585358)
chr7 (115-211)||(10493949-10494045)
chr7 (107-211)||(8667916-8668020)
chr7 (108-211)||(1301961-1302064)
chr7 (115-211)||(8654947-8655043)
chr7 (115-194)||(3147786-3147865)
chr7 (114-192)||(8629048-8629126)
chr7 (114-192)||(8659879-8659957)
chr7 (127-211)||(8671217-8671301)
chr7 (114-194)||(17268453-17268533)
chr7 (114-194)||(17260755-17260835)
chr7 (115-194)||(27830450-27830529)
chr7 (108-194)||(8647388-8647474)
chr7 (104-195)||(8582213-8582304)
chr7 (108-211)||(8546129-8546232)
chr7 (104-151)||(8570868-8570915)
chr7 (104-141)||(8559900-8559937)
[»] chr4 (3 HSPs)
chr4 (107-211)||(35132943-35133047)
chr4 (107-211)||(9335458-9335562)
chr4 (108-192)||(30775768-30775852)
[»] chr5 (2 HSPs)
chr5 (108-194)||(28220465-28220551)
chr5 (126-194)||(42555530-42555598)
[»] chr1 (4 HSPs)
chr1 (118-203)||(52549098-52549183)
chr1 (107-194)||(15595550-15595638)
chr1 (108-186)||(4678126-4678204)
chr1 (109-211)||(34466362-34466464)
[»] chr6 (1 HSPs)
chr6 (114-211)||(28911079-28911176)
[»] chr8 (1 HSPs)
chr8 (114-194)||(43745361-43745441)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 12258104 - 12258250
Alignment:
Q  60 taatgctgaagtgctgaataattgaatgttgagaattacaaatgttaatttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgt 159  Q
    |||||||||||| |||||||||| |||  ||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||| ||    
T  12258104 taatgctgaagtactgaataatttaat--tgagaattacaaatgttaaatttc-cagatgctaagaggttaattggtaggaagtttagtgatcaagtagt 12258200  T
Q  160 tcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatg 209  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  12258201 tcaagatgatataatgttgtggccatttaaagtcactgctggtgtcaatg 12258250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 12235317 - 12235186
Alignment:
Q  79 aattgaatgttgagaattacaaatgttaatttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttg 178  Q
    ||||||||| ||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  12235317 aattgaatgatgaaagttactaatgttaattttt-cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatgtgatgttg 12235219  T
Q  179 tggccattcaaggtcactgctggtgtcaatgac 211  Q
    ||||||||||||||| |||||||||||||||||    
T  12235218 tggccattcaaggtcgctgctggtgtcaatgac 12235186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 7542829 - 7542723
Alignment:
Q  105 taatttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgt 204  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||||| ||||| ||||     
T  7542829 taatttttgtagatgctaagaggttaattggtaggaagtttagtgatcctgttgttcaagatgatatactgttatggccattcaaggtgactgcgggtga 7542730  T
Q  205 caatgac 211  Q
    |||||||    
T  7542729 caatgac 7542723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 11999994 - 11999891
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 207  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||  |||||||||||||||  | |||| |||||||||||||||||||||| ||||||    
T  11999994 ttttttcagatgctaagaggttaattggttggaagtttagtgatcttgttgttcaagatgatggattgttatggccattcaaggtcactgctgatgtcaa 11999895  T
Q  208 tgac 211  Q
    ||||    
T  11999894 tgac 11999891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 16657085 - 16657188
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 207  Q
    ||||| |||||||||| |||||||| |||||||||||||||||||  ||||||||| ||||||| || ||||||||||||||||||| ||| || || ||    
T  16657085 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaa 16657184  T
Q  208 tgac 211  Q
    ||||    
T  16657185 tgac 16657188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 43626010 - 43625924
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 194  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||   ||||||||| ||||||| |||||||||||||||| |||||    
T  43626010 tttttccagatgctaagaggttaatcggtaggaagtttagtgattctgttgttcaaaatgatatcatgttgtggccattcagggtca 43625924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 16661566 - 16661663
Alignment:
Q  114 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgac 211  Q
    |||||||||||||||||||||||||||| |||||||| |  ||||||||| | |||||| |||||||||| |||||||| | ||||||||| ||||||    
T  16661566 cagatgctaagaggttaattggtaggaaatttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgac 16661663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 12244974 - 12245077
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 207  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||   ||||||  ||||||  | | || ||||| |||||||||||||||||||||||    
T  12244974 ttttttcagatgctaagagattaattggtaggaagtttagtgatcctattgttctggatgatgcattattatggccgttcaaggtcactgctggtgtcaa 12245073  T
Q  208 tgac 211  Q
    ||||    
T  12245074 tgac 12245077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 14704007 - 14703905
Alignment:
Q  109 ttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaat 208  Q
    |||| ||||||||||||||||  | || ||||||||||| ||||   ||||||||||||||||| | || |||||||| |||||||||||||| ||| ||    
T  14704007 tttttcagatgctaagaggttgttgggaaggaagtttagcgatcctattgttcaagatgatatacttttatggccatttaaggtcactgctggagtcgat 14703908  T
Q  209 gac 211  Q
    |||    
T  14703907 gac 14703905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 39373460 - 39373417
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgat 151  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||    
T  39373460 ttttttcagatgctaagaggttaattggtaggaagtttaatgat 39373417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 13333024 - 13333123
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  13333024 ttttttcagatgctaagaggttaattggtaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgtcaa 13333123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 6790113 - 6790009
Alignment:
Q  107 atttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtca 206  Q
    |||||| ||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||| ||||| |||||||||||||||| |||||| ||||    
T  6790113 attttttcagatgctaagaggttaattggtaggaagtttagtgattctgttgttcaaaatgatatgatgttttggccattcaaggtcattgctggcgtca 6790014  T
Q  207 atgac 211  Q
    |||||    
T  6790013 atgac 6790009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 8585274 - 8585358
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggt 192  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  8585274 ttttttcagatgccaagaggttaattggtaggaagtttagtgatcccgttgttcaaaatgatataatgttgtggccattcaaggt 8585358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 10493949 - 10494045
Alignment:
Q  115 agatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgac 211  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||| | |||||||||||||||||||||||||| ||| | ||||||||||||    
T  10493949 agatgctaagaggttaattggcaggaagtttagtgatccggttgttcaaaacgatataatgttgtggccattcaaggttacttcaggtgtcaatgac 10494045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 8668020 - 8667916
Alignment:
Q  107 atttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| |  |||||||||   |||||| ||||||||||||||||||| | | ||||||| |    
T  8668020 atttttgcagatgctaagaggttaattggtaggaagtttagtgaccccgttgttcaaagagatatattgttgtggccattcaaggttatttctggtgtta 8667921  T
Q  207 atgac 211  Q
    |||||    
T  8667920 atgac 8667916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 1302064 - 1301961
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 207  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||  |||||||||| | || || ||||||||||||||||||||||  || ||||| ||    
T  1302064 ttttttcagatgctaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggtcatcgccggtgtgaa 1301965  T
Q  208 tgac 211  Q
    ||||    
T  1301964 tgac 1301961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 8655043 - 8654947
Alignment:
Q  115 agatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgac 211  Q
    ||||||||||||||||||||||||||||| ||||||||   |||||||| | ||||| |||||||||||||||| ||| ||| ||||||| ||||||    
T  8655043 agatgctaagaggttaattggtaggaagtatagtgatcctattgttcaaaaggatatcatgttgtggccattcatggttacttctggtgttaatgac 8654947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 3147865 - 3147786
Alignment:
Q  115 agatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 194  Q
    |||||| |||||||||||||||||||||||| |||||   ||||||||| ||||||| ||||||||||||||||||||||    
T  3147865 agatgcaaagaggttaattggtaggaagtttggtgattctgttgttcaaaatgatatgatgttgtggccattcaaggtca 3147786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 8629126 - 8629048
Alignment:
Q  114 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggt 192  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||||||| | ||||| ||||| ||||||||||||||    
T  8629126 cagatgccaagaggttaattggtaggaagtttagtgatcctgttgttcaaaaggatatcatgttctggccattcaaggt 8629048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 8659957 - 8659879
Alignment:
Q  114 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggt 192  Q
    ||||||| ||||| ||||||||||||||||||||||||  |||||||||| | || || ||||||||||||||||||||    
T  8659957 cagatgcaaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggt 8659879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 8671217 - 8671301
Alignment:
Q  127 gttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgac 211  Q
    ||||||||||||||||||||||||||  |||||||||   |||||| ||||||||||||||||||| | | ||||||| ||||||    
T  8671217 gttaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgac 8671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 17268533 - 17268453
Alignment:
Q  114 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 194  Q
    |||||||||||||  ||||||||||||||||||||||||  || || ||| | |||||||||| |||||||||||||||||    
T  17268533 cagatgctaagagactaattggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtca 17268453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 17260835 - 17260755
Alignment:
Q  114 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 194  Q
    |||||||||||||  || |||||||||||||||||||||  || || ||| | |||||||||| |||||||||||||||||    
T  17260835 cagatgctaagagactagttggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtca 17260755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 27830450 - 27830529
Alignment:
Q  115 agatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 194  Q
    |||||||||||||||||||||||||||||| || ||| | ||||||||| | |||||||  ||||||| |||||| ||||    
T  27830450 agatgctaagaggttaattggtaggaagttcagcgatgatgttgttcaaaaagatataaacttgtggctattcaaagtca 27830529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 8647474 - 8647388
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 194  Q
    ||||| ||||||||||||||||||| ||||||||||||  ||||   ||||||||  ||||||  | ||||||||||||||||||||    
T  8647474 tttttccagatgctaagaggttaatcggtaggaagttttttgattctgttgttcagaatgataagaagttgtggccattcaaggtca 8647388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 8582304 - 8582213
Alignment:
Q  104 ttaatttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcac 195  Q
    ||||||||| ||||||| |||||||||||||| ||||| | |||||||    |||||||| | ||||| | ||||||||| |||||||||||    
T  8582304 ttaattttttcagatgcaaagaggttaattggaaggaaatatagtgattccattgttcaaaaggatatcaagttgtggcccttcaaggtcac 8582213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 8546232 - 8546129
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 207  Q
    ||||||||||||| |||||||||||||| ||||| | |||||||    |||||||  ||||| || |||||||||| || ||||||| | | ||||| ||    
T  8546232 tttttgcagatgcaaagaggttaattggaaggaaatatagtgattcctttgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaa 8546133  T
Q  208 tgac 211  Q
    ||||    
T  8546132 tgac 8546129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 8570915 - 8570868
Alignment:
Q  104 ttaatttttgcagatgctaagaggttaattggtaggaagtttagtgat 151  Q
    ||||||||||||||||  |||||||||||||| ||||||| |||||||    
T  8570915 ttaatttttgcagatgtaaagaggttaattggaaggaagtatagtgat 8570868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 8559937 - 8559900
Alignment:
Q  104 ttaatttttgcagatgctaagaggttaattggtaggaa 141  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  8559937 ttaatttttgcagatgcaaagaggttaattggaaggaa 8559900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 35133047 - 35132943
Alignment:
Q  107 atttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtca 206  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||| || | |||||||||||||||||||| ||||| |    
T  35133047 attttttcagatgctaaaaggttaattggtaggaagtttagtgatcctattgttcaagatgatatactgctatggccattcaaggtcactgccggtgtaa 35132948  T
Q  207 atgac 211  Q
    |||||    
T  35132947 atgac 35132943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 9335458 - 9335562
Alignment:
Q  107 atttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtca 206  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||  |||||||||   |||||| ||||||||||||||||||| | | ||||||| |    
T  9335458 atttttgcagatgctaagagattaactggtaggaagtttagtgatctggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgtta 9335557  T
Q  207 atgac 211  Q
    |||||    
T  9335558 atgac 9335562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 30775852 - 30775768
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggt 192  Q
    ||||| |||||||||| ||||||||||||||||| ||||| || |  ||||||||| | |||||  |||||||||||||||||||    
T  30775852 ttttttcagatgctaaaaggttaattggtaggaaatttagcgaccctgttgttcaaaaagatattttgttgtggccattcaaggt 30775768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 28220551 - 28220465
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 194  Q
    ||||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||| ||||||||||||||||||||    
T  28220551 ttttttcagatgctaagaggttaattggtaggaagtttagtgactctgttgttcaagatgatataaagttgtggccattcaaggtca 28220465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 42555530 - 42555598
Alignment:
Q  126 ggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 194  Q
    ||||||||||||||||||||| |||| | ||||||||| |||| || | ||||||||||||||||||||    
T  42555530 ggttaattggtaggaagtttaatgattatgttgttcaaaatgacatgaagttgtggccattcaaggtca 42555598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 52549098 - 52549183
Alignment:
Q  118 tgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtg 203  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||||||||| |||| ||| |||||||||||||||| ||||    
T  52549098 tgctaagaggttaattggtaagaagtttagtgatcctgttgttcaagatgatatattgttatggtcattcaaggtcactgccggtg 52549183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 15595638 - 15595550
Alignment:
Q  107 atttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagtt-gttcaagatgatataatgttgtggccattcaaggtca 194  Q
    |||||| ||||||||||||| |||||  |||||||||||||||||   ||| |||||| ||||||||| ||||||||||||||||||||    
T  15595638 attttttcagatgctaagagattaatcagtaggaagtttagtgattctgtttgttcaaaatgatataaagttgtggccattcaaggtca 15595550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 4678126 - 4678204
Alignment:
Q  108 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccatt 186  Q
    ||||||||||||||||||||||||||||||||| || |||||||   ||||||||| | || || ||||||||||||||    
T  4678126 tttttgcagatgctaagaggttaattggtaggaggtatagtgattctgttgttcaaaaagacatcatgttgtggccatt 4678204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 34466362 - 34466464
Alignment:
Q  109 ttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaat 208  Q
    |||| |||||||||||||||||||||| || || ||||||||||  | |||||||   ||||| ||||| ||||||||||| || | ||||||||| |||    
T  34466362 tttttcagatgctaagaggttaattggcagaaaatttagtgatcctgatgttcaaacagatatgatgttatggccattcaaagttattgctggtgttaat 34466461  T
Q  209 gac 211  Q
    |||    
T  34466462 gac 34466464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 28911176 - 28911079
Alignment:
Q  114 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgac 211  Q
    |||||||||||||| |||||| |||||||||||||||||  ||||||||| | |||  |||||||| ||| |||||||||| ||| ||||||||||||    
T  28911176 cagatgctaagaggataattgataggaagtttagtgatcccgttgttcaaaacgattcaatgttgtcgccgttcaaggtcattgccggtgtcaatgac 28911079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 43745441 - 43745361
Alignment:
Q  114 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 194  Q
    ||||||||||||||||||||||||||||||||| ||||   | ||||||| ||||||| | ||||||||| ||||||||||    
T  43745441 cagatgctaagaggttaattggtaggaagtttaatgattctgatgttcaaaatgatatgaagttgtggccgttcaaggtca 43745361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University