View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_low_11 (Length: 537)

Name: NF1362_low_11
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_low_11
NF1362_low_11
[»] chr1 (7 HSPs)
chr1 (30-301)||(31029561-31029832)
chr1 (30-301)||(31036531-31036802)
chr1 (405-525)||(31036889-31037009)
chr1 (30-301)||(31026726-31026979)
chr1 (30-111)||(31041728-31041809)
chr1 (223-301)||(31041908-31041987)
chr1 (448-510)||(31033900-31033961)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 31029561 - 31029832
Alignment:
Q  30 taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31029561 taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc 31029660  T
Q  130 tttgcttgagatttgaagatgtgaatggtatgttttgaaacaagcaaac--nnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttg 227  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||                     ||| ||||||||||||| |||  |||||||    
T  31029661 tttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatatagtgactccatgcatgaagaacgagtttttg 31029760  T
Q  228 aaattcgtttagcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac 301  Q
    |||||||||||||||||||| ||| |  |||||||||||||||||||||| |||||||||||||||||||||||    
T  31029761 aaattcgtttagcttgactaattgca--attcttatggtttgaacttgaaagttgacaattgaacgaatcaaac 31029832  T

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Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 31036531 - 31036802
Alignment:
Q  30 taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31036531 taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc 31036630  T
Q  130 tttgcttgagatttgaagatgtgaatggtatgttttgaaacaagcaaac--nnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttg 227  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||                     ||| ||||||||||||| |||  |||||||    
T  31036631 tttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatatagtgactccatgcatgaagaacgagtttttg 31036730  T
Q  228 aaattcgtttagcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac 301  Q
    |||||||||||||||||||| ||| |  |||||||||||||||||||||| |||||||||||||||||||||||    
T  31036731 aaattcgtttagcttgactaattgca--attcttatggtttgaacttgaaagttgacaattgaacgaatcaaac 31036802  T

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Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 405 - 525
Target Start/End: Original strand, 31036889 - 31037009
Alignment:
Q  405 accgttgattatccattttaatactccaaacaggcacggtgacaatttatttattttgcattcatttagtcctgtgtctcaaaatcggctaaatggagac 504  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31036889 accgtggattatccattttaatactccaaacaggcacggtgacaatttatttattttgcattcatttagtcctgtgtctcaaaatcggctaaatggagac 31036988  T
Q  505 ccattctatttaccggagtat 525  Q
    |||||||||||||||||||||    
T  31036989 ccattctatttaccggagtat 31037009  T

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Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 31026726 - 31026979
Alignment:
Q  30 taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatccttattacaacaagtttc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||                  |||||||||    
T  31026726 taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaaattccttctagttttgtgccttatt------------------acaagtttc 31026807  T
Q  130 tttgcttgagatttgaagatgtgaatggtatgttttgaaacaagcaaacnnnnnnnnnnnnnnnnnnngtggctccatgcatgaaaaacaggtttttgaa 229  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||                   ||| |||||||||||||  ||  |||||||||    
T  31026808 tttgcttgagatttgaagatgtgaatggtatgttttggaacaagcaaacatatatatggatatatatagtgactccatgcatgaagtacgagtttttgaa 31026907  T
Q  230 attcgtttagcttgactacttgtaatattcttatggtttgaacttgaatgttgacaattgaacgaatcaaac 301  Q
    |||||||||| |||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31026908 attcgtttagtttgactaactgtaatattcttatggtttgaacttgaaagttgacaattgaacgaatcaaac 31026979  T

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Target: chr1; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 31041728 - 31041809
Alignment:
Q  30 taatttgtagtattaatgtaatgtaatttggatgaaataattaaataaattccttctagttttgtgccttattgatgatatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  31041728 taatttgtagtattaatgtaatgtaatttggatgaaataattaaaaaatttccttctagttttgtgccttattgataatatc 31041809  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 31041908 - 31041987
Alignment:
Q  223 ttttgaaattcgtttagcttgactacttgtaatattcttatggtttgaacttg--aatgttgacaattgaacgaatcaaac 301  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||||||||  || |||||| ||||||||||||||||    
T  31041908 ttttgaaattcgttgagcttgactaattgtaat-ttcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaac 31041987  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 510
Target Start/End: Original strand, 31033900 - 31033961
Alignment:
Q  448 aatttatttattttg-cattcatttagtcctgtgtctcaaaatcggctaaatggagacccattc 510  Q
    ||||||||||||||| ||||||||||| |  |||||||||||| || |||||||||||||||||    
T  31033900 aatttatttattttgacattcatttagcc--gtgtctcaaaattggataaatggagacccattc 31033961  T

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