View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_12 (Length: 535)
Name: NF1362_low_12
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_12 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 30 - 525
Target Start/End: Complemental strand, 37868225 - 37867724
Alignment:
| Q |
30 |
cagagatggtgagtcggaaacaagggaaaattgatattatggaggggcaggatatttaagatttcacaccataattagtgcaacaaggccatgcatagtg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37868225 |
cagagatggtgagtcggaaacaagggaaaattgatattatggaggggcaggatatttaagatttcacaccataattagtgcaacaaggccatgcatagtg |
37868126 |
T |
|
| Q |
130 |
attgaaatttgaaacagttaatccccttaatccattgattctccttattgaagttctttgaaaaattaacttactgaagaaacatttaatctgtatactt |
229 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37868125 |
attgaaatttgaaacggttaatccccttaatccattgattctccttattgaagttctttgaaaaattaacttactgaagaaacatttaatctgtatactt |
37868026 |
T |
|
| Q |
230 |
tgcacttgttctctacattggaattaaaatcaatgctcacgtgaaacaagaaagattattcatatt-aacattacttatcatagtttacaaatgataatc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
37868025 |
tgcacttgttctctacattggaattaaaatcaatgctcacgtgaaacaagaaagattattcatattaaacattatttatcatagtttacaaatgataatc |
37867926 |
T |
|
| Q |
329 |
aata---actaattacaacagagaagtacatacaaattaaaaatggataaacagaaaataatgttcg--tatcctactgatcaggttgagcttggcaatg |
423 |
Q |
| |
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|||| || | |||||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37867925 |
aatagtgaccatttacaacagagaggcacaaacaaattaaaaatggataaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatg |
37867826 |
T |
|
| Q |
424 |
aatttgagattcagagatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttca |
523 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37867825 |
aatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttca |
37867726 |
T |
|
| Q |
524 |
tc |
525 |
Q |
| |
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|| |
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|
| T |
37867725 |
tc |
37867724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 279 - 525
Target Start/End: Complemental strand, 37882010 - 37881764
Alignment:
| Q |
279 |
gaaagattattcatattaacattacttatcatagtttacaaatgataatcaataactaattacaacagagaagtacatacaaattaaaaatggataaaca |
378 |
Q |
| |
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||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37882010 |
gaaagattattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagagaagtacatacaaattaaaaatggataaaca |
37881911 |
T |
|
| Q |
379 |
gaaaataatgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagagatacgtttcttgtattgagcaatgaatgctgtagctctc |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37881910 |
gaaaataatgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatgaatgctgtagctctc |
37881811 |
T |
|
| Q |
479 |
atgtcaataacaggatcagctacaccccaactgcctctgtcttcatc |
525 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37881810 |
atgtcaataacaggatcagctacaccccaactacctctgtcttcatc |
37881764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 273 - 525
Target Start/End: Complemental strand, 37855794 - 37855536
Alignment:
| Q |
273 |
aaacaagaaagattattcatattaa-cattacttatcatagtttacaaatgataatcaata---actaattacaacagagaagtacatacaaattaaaaa |
368 |
Q |
| |
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||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||||| | ||| |||||||||||| |
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| T |
37855794 |
aaacatgaaatattattcatattaaacattacttatcatagtttacaaatgataatcaatagtgaccatttacaacagagaggcacaaacaaattaaaaa |
37855695 |
T |
|
| Q |
369 |
tggataaacagaaaataatgttcgtat--cctactgatcaggttgagcttggcaatgaatttgagattcagagatacgtttcttgtattgagcaatgaat |
466 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37855694 |
tggataaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatgaat |
37855595 |
T |
|
| Q |
467 |
gctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatc |
525 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37855594 |
gctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatc |
37855536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 270 - 525
Target Start/End: Complemental strand, 37911968 - 37911709
Alignment:
| Q |
270 |
gtgaaacaagaaagattattcatattaacattacttatcatagtttacaaatgataatcaataactaattacaacagagaagtacatacaaattaaaa-- |
367 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||| |
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| T |
37911968 |
gtgaaacttgaaagattattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagag--gtataaacaaattaaaagt |
37911871 |
T |
|
| Q |
368 |
--atggataaacagaaaataatgttcgtat--cctactgatcaggttgagcttggcaatgaatttgagattcagagatacgtttcttgtattgagcaatg |
463 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37911870 |
ggatggattaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatg |
37911771 |
T |
|
| Q |
464 |
aatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatc |
525 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37911770 |
aatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatc |
37911709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 182; Significance: 4e-98; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 273 - 525
Target Start/End: Original strand, 16782 - 17040
Alignment:
| Q |
273 |
aaacaagaaagattattcatattaa-cattacttatcatagtttacaaatgataatcaata---actaattacaacagagaagtacatacaaattaaaaa |
368 |
Q |
| |
|
||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||| | ||| |||||||||||| |
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|
| T |
16782 |
aaacatgaaatattattcatattaaacattatttatcatagtttacaaatgataatcaatagtgaccatttacaacagagaggcacaaacaaattaaaaa |
16881 |
T |
|
| Q |
369 |
tggataaacagaaaataatgttcgtat--cctactgatcaggttgagcttggcaatgaatttgagattcagagatacgtttcttgtattgagcaatgaat |
466 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16882 |
tggataaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatgaat |
16981 |
T |
|
| Q |
467 |
gctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatc |
525 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
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| T |
16982 |
gctgtagctctcatgtcaataacaggatcagctacaccccaacttcctctatcttcatc |
17040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 273 - 525
Target Start/End: Original strand, 27110 - 27368
Alignment:
| Q |
273 |
aaacaagaaagattattcatattaa-cattacttatcatagtttacaaatgataatcaata---actaattacaacagagaagtacatacaaattaaaaa |
368 |
Q |
| |
|
||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||| | ||| |||||||||||| |
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|
| T |
27110 |
aaacatgaaatattattcatattaaacattaattatcatagtttacaaatgataatcaatagtgaccatttacaacagagaggcacaaacaaattaaaaa |
27209 |
T |
|
| Q |
369 |
tggataaacagaaaataatgttcgtat--cctactgatcaggttgagcttggcaatgaatttgagattcagagatacgtttcttgtattgagcaatgaat |
466 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
27210 |
tggataaacagaaaataatgttcgtatatcctactgatcaggttgaccttggcaatgaatttgagattcagaaatacgtttcttgtattgagcaatgaat |
27309 |
T |
|
| Q |
467 |
gctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatc |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27310 |
gctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatc |
27368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 279 - 525
Target Start/End: Original strand, 6464 - 6712
Alignment:
| Q |
279 |
gaaagattattcatattaacattacttatcatagtttacaaatgataatcaataactaattacaacagagaagtacatacaaattaaaa----atggata |
374 |
Q |
| |
|
||||| ||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||| |
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|
| T |
6464 |
gaaaggttattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagag--gtataaacaaattaaaagtggatggatt |
6561 |
T |
|
| Q |
375 |
aacagaaaataatgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagagatacgtttcttgtattgagcaatgaatgctgtagc |
474 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
6562 |
aacagaaaagattgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaattcgtttcttgtattgagcaatgaatgctgtagc |
6661 |
T |
|
| Q |
475 |
tctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatc |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
6662 |
tctcatgtcaataacaggatcagctacaccccaacttcctctatcttcatc |
6712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 446 - 525
Target Start/End: Original strand, 45759321 - 45759400
Alignment:
| Q |
446 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatc |
525 |
Q |
| |
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||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||| |
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|
| T |
45759321 |
ttcttgtatcgagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatc |
45759400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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