View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_17 (Length: 521)
Name: NF1362_low_17
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 107 - 442
Target Start/End: Original strand, 3598099 - 3598434
Alignment:
| Q |
107 |
aagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagtagtagaaatgtgaatctcaatttcactactaaaaatagtcacatc |
206 |
Q |
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| T |
3598099 |
aagcatgaaatatagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgtgaatctcaatttcactactaaaaatagtcacatc |
3598198 |
T |
|
| Q |
207 |
tcgaatcgagttaatgataattcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttgacataaaagttttaagactaaagattt |
306 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598199 |
tcgaatcaagttaatgatacttcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttgacataaaagttttaagactaaagattt |
3598298 |
T |
|
| Q |
307 |
aggaactttacctgaagttttacaaaacaatcacaggaagtgataatcatgattatccaaaaacttttgcattttcacggcatagtcatccgataatgtg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3598299 |
aggaactttacctgaagttttacaaaacaatcacaggaagtgataatcatgattatccaaaaacttttacattttcacggcatagtcatccgataatgtg |
3598398 |
T |
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| Q |
407 |
caatgaattctattcccccctacaaagtgtaaatta |
442 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3598399 |
caatgaattctattcccccctacaaagtgtaaatta |
3598434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 60 - 442
Target Start/End: Complemental strand, 4356973 - 4356591
Alignment:
| Q |
60 |
caaaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaa |
159 |
Q |
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||||||||||||||||||||||||||| |||||| | ||| | |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
4356973 |
caaaggctaatacattattcaacaaaaatatatttatacatagtcataagcatgaaata--gaggaaataaagaaagaaatataagaaataacagacaaa |
4356876 |
T |
|
| Q |
160 |
gtagtagaaatgtgaatctcaatttcactactaaaaatagtcac--atctcgaatcgagttaatgataattcagaggttgaaatcaacatatgatgaatt |
257 |
Q |
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|||||||||| ||||||||||||||| ||| |||||||||||| ||||| | || |||| ||||| |||| ||||||| ||||| ||||||||||| |
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| T |
4356875 |
gtagtagaaacgtgaatctcaatttcgctaacaaaaatagtcacgtatctcaactcaagttcctgatacttcaaaggttgagatcaatatatgatgaata |
4356776 |
T |
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| Q |
258 |
ttatataaaaacactatagttgacataaaagttttaagactaaagatttaggaactttacctgaagttttacaaaacaatcacaggaagtgat-aatcat |
356 |
Q |
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||||| |||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||| || |||| |||||||||| ||| |||||| |
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| T |
4356775 |
ttatagaaaaacactatagttgacataaaaatttaaatactaaagattaaggaactttacctgaagttttgcagaacagtcacaggaagcgatgaatcat |
4356676 |
T |
|
| Q |
357 |
gattatccaaaaacttttgcattttcacggcatagtcatccgataatgtgcaatgaattctattcccccctacaaagtgtaaatta |
442 |
Q |
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|||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |
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| T |
4356675 |
gattatcctaaaattgttgcattctcacggcatagtcatccgataatgtgcaatgaattctatt-ccccctacgaagtgcaaatta |
4356591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 24455738 - 24455633
Alignment:
| Q |
62 |
aaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagt |
161 |
Q |
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||||||||| ||| ||||||||||| || ||| || |||||| |||||||||||| | |||||| ||| |||||||| | |||||||| || |||| |
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| T |
24455738 |
aaggctaatgcataattcaacaaaaataggatgatactcaatcagaagcatgaaata--gaggaaatgaagcaagaaatagatgaaataactaacgaagt |
24455641 |
T |
|
| Q |
162 |
agtagaaa |
169 |
Q |
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|||||||| |
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| T |
24455640 |
agtagaaa |
24455633 |
T |
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