View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1362_low_19 (Length: 513)
Name: NF1362_low_19
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 96 - 509
Target Start/End: Original strand, 38608689 - 38609102
Alignment:
| Q |
96 |
atgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactatttt |
195 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608689 |
atgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactatttt |
38608788 |
T |
|
| Q |
196 |
cgccgtggatgatctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatctt |
295 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
38608789 |
cgccgttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatctt |
38608888 |
T |
|
| Q |
296 |
gaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgagga |
395 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
38608889 |
gagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgagga |
38608988 |
T |
|
| Q |
396 |
ttaactatgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcatatcaatcctattgcggc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608989 |
ttaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggc |
38609088 |
T |
|
| Q |
496 |
tgcctatgatacta |
509 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
38609089 |
tgcttatgatacta |
38609102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 96 - 509
Target Start/End: Original strand, 38793472 - 38793885
Alignment:
| Q |
96 |
atgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactatttt |
195 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793472 |
atgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactatttt |
38793571 |
T |
|
| Q |
196 |
cgccgtggatgatctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatctt |
295 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
38793572 |
cgccgttgatgatctttctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatctt |
38793671 |
T |
|
| Q |
296 |
gaaaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgagga |
395 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
38793672 |
gagaagcttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgagga |
38793771 |
T |
|
| Q |
396 |
ttaactatgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcatatcaatcctattgcggc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793772 |
ttaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggc |
38793871 |
T |
|
| Q |
496 |
tgcctatgatacta |
509 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
38793872 |
tgcttatgatacta |
38793885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 107 - 509
Target Start/End: Complemental strand, 38121423 - 38121021
Alignment:
| Q |
107 |
aggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtggatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
38121423 |
aggctccgtaataacggtttcagcatcctctcccttgctatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgctgttgatg |
38121324 |
T |
|
| Q |
207 |
atctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttcc |
306 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
38121323 |
atctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcattacttgtcaatcgccgatcttgagaagcttcc |
38121224 |
T |
|
| Q |
307 |
agttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
38121223 |
ggttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtg |
38121124 |
T |
|
| Q |
407 |
agagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcatatcaatcctattgcggctgcctatgata |
506 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38121123 |
agagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgata |
38121024 |
T |
|
| Q |
507 |
cta |
509 |
Q |
| |
|
||| |
|
|
| T |
38121023 |
cta |
38121021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 103 - 509
Target Start/End: Complemental strand, 28731001 - 28730595
Alignment:
| Q |
103 |
gctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgtg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731001 |
gctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgaagagctcataactctcaacaacatgactattttcgccgtt |
28730902 |
T |
|
| Q |
203 |
gatgatctttctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagc |
302 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||| |
|
|
| T |
28730901 |
gatgatctttctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgttacttgtcaatcgccgatcttgagaagc |
28730802 |
T |
|
| Q |
303 |
ttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaacta |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||||||| |
|
|
| T |
28730801 |
ttccagttggaactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtgacattagcaccgatgaggattaacta |
28730702 |
T |
|
| Q |
403 |
tgtgagagttaaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcatatcaatcctattgcggctgcctat |
502 |
Q |
| |
|
||| || || ||||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
28730701 |
tgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctattgcggatgcttat |
28730602 |
T |
|
| Q |
503 |
gatacta |
509 |
Q |
| |
|
||||||| |
|
|
| T |
28730601 |
gatacta |
28730595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University