View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_20 (Length: 511)
Name: NF1362_low_20
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 30 - 505
Target Start/End: Original strand, 33606180 - 33606655
Alignment:
| Q |
30 |
ccctttgggtccaagaaagagcttcctctgtatgatggtaccaaatactcaccactgaagctctctggcttccctgatgctaccaattgtttgatggtga |
129 |
Q |
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| T |
33606180 |
ccctttgggtccaagaaagagcttcctctgtatgatggtaccaaatactcaccactgaagctctctggcttccctgatgctaccaattgtttgatggtga |
33606279 |
T |
|
| Q |
130 |
aaaggaatggcacacgctcaccgccgggaagctgaactgtgactgcggcgtagtcaatgccatctttctcctcaaatttgacagagccgtctgatgaaac |
229 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33606280 |
aaaggaatggcacacgctcaccaccgggaagctgaactgtgactgcggcgtagtcaatgccatctttctcctcaaatttgacagagccgtctgatgaaac |
33606379 |
T |
|
| Q |
230 |
ctcaaagggtccttcaatctcgtcgagggtgtaggttaaacgtgtcatgagtttggtgttttggaatgcaagtggggtgttcttggttacaccttctgct |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33606380 |
ctcaaagggtccttcaatctcgtcgagggtgtaggttaaacgtgtcatgagtttggtgttttggaatgcaagtggggtgttcttggttacaccttctgct |
33606479 |
T |
|
| Q |
330 |
ttaactgtgaatgaagttggttcgaggcagaatttcttggcgttgtattttcctggtttgaaggagaatgagtctactcctccatcaatggttggacatt |
429 |
Q |
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| T |
33606480 |
ttaactgtgaatgaagttggttcgaggcagaatttcttggcgttgtattttcctggtttgaaggagaatgagtctactcctccatcaatggttggacatt |
33606579 |
T |
|
| Q |
430 |
ggtttgctgttccggttcctttgacttccatatatgttttgctttgaatttcgtcgaatgtcagcctctgtggtgc |
505 |
Q |
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| T |
33606580 |
ggtttgctgttccggttcctttgacttccaaatatgttttgctttgaatttcgtcgaatgtcagcctctttggtgc |
33606655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 30 - 484
Target Start/End: Complemental strand, 6963130 - 6962676
Alignment:
| Q |
30 |
ccctttgggtccaagaaagagcttcctctgtatgatggtaccaaatactcaccactgaagctctctggcttccctgatgctaccaattgtttgatggtga |
129 |
Q |
| |
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||||||||||||||||| || |||| ||| |||||||| ||| |||| ||||| ||||| || ||||||||||| |||||||| |||||||| |||| |
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| T |
6963130 |
ccctttgggtccaagaacgacgaacctcggtaagatggtactaaaaactctccactaaagctgtccggcttccctgacgctaccaactgtttgatcgtga |
6963031 |
T |
|
| Q |
130 |
aaaggaatggcacacgctcaccgccgggaagctgaactgtgactgcggcgtagtcaatgccatctttctcctcaaatttgacagagccgtctgatgaaac |
229 |
Q |
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| T |
6963030 |
agaggaatggcacgcgctcgcctccggggagctgaacagtcacagcagcataatcaatgccatctttctcctcgaatttgactgtaccgtcaggagatac |
6962931 |
T |
|
| Q |
230 |
ctcaaagggtccttcaatctcgtcgagggtgtaggttaaacgtgtcatgagtttggtgttttggaatgcaagtggggtgttcttggttacaccttctgct |
329 |
Q |
| |
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|| || |||||||| |||||||| || ||||| || || || ||||| || || || |||||||| | || |||| ||| || |||| ||||| | | |
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| T |
6962930 |
ttcgaatggtccttctatctcgtccagcgtgtatgtcaagcgcgtcattagcttagtattttggaaatcgagcggggagtttttagttatgccttcggat |
6962831 |
T |
|
| Q |
330 |
ttaactgtgaatgaagttggttcgaggcagaatttcttggcgttgtattttcctggtttgaaggagaatgagtctactcctccatcaatggttggacatt |
429 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||| || || ||||||||||||| ||||||||||||||||| ||| || ||||| |||||||||| |
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| T |
6962830 |
tttactgtgaatgaagttggttcaaggcagaatttttttgcattgtattttcctgacttgaaggagaatgagtcggatccaccttcaattgttggacatt |
6962731 |
T |
|
| Q |
430 |
ggtttgctgttccggttcctttgacttccatatatgttttgctttgaatttcgtc |
484 |
Q |
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|||| |||||||| |||||||| ||||| | ||||||||||| || |||||||| |
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| T |
6962730 |
ggttagctgttcctgttcctttcacttctaagtatgttttgctctggatttcgtc |
6962676 |
T |
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