View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_21 (Length: 490)
Name: NF1362_low_21
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 30 - 479
Target Start/End: Complemental strand, 38487806 - 38487357
Alignment:
| Q |
30 |
cttcatccatgccgaaaccatcttccaacaatttcctattctaaccttcaggttccacttccttctctaaccttcgatcgatgctatttcatttcaatcg |
129 |
Q |
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| T |
38487806 |
cttcatccatgccgaaaccatcttccaacattttcctattctaaccttcaggttccacttccttctctaaccttcgatcgatgctatttcatttcaatcg |
38487707 |
T |
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| Q |
130 |
ctgattcatgttttattccaataataatattcattaatcgattaaattaaattcacaaattcaaatttggtcattgcgttgattttcatagtgttcaatt |
229 |
Q |
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| T |
38487706 |
ctgattcatgttttattccaataataatattcattaatcgattaaattaaattcacaaattcaaatttggtcattgcgttgattttcatagtgttcaatt |
38487607 |
T |
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| Q |
230 |
taaagatgaaaagtgtttcgactttggagcttgaatagttataattatcatttactgtttcttacataaatgattaattaattaatgagattgattatta |
329 |
Q |
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| T |
38487606 |
taaagatgaaaagtgtttcgactttggagcttgaatagttataattatcatttactgtttcttacataaatgattaattaattaatgagattgattatta |
38487507 |
T |
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| Q |
330 |
aggttttgttgaattgaatcaggagtgaaatggatgatcctgctgtacttcagttgcacaaatgggacccatctcagacccaaattccactttcggaatt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487506 |
aggttttgttgaattgaatcaggagtgaaatggatgatcctgctgtacttcagttgcacaaatgggacccatctcagacccaaattccactttcggaatt |
38487407 |
T |
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| Q |
430 |
tcgtcaagcttttatttctcctactagacagattctgcttttgcattcat |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487406 |
tcgtcaagcttttatttctcctactagacagattctgcttttgcattcat |
38487357 |
T |
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