View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_22 (Length: 481)
Name: NF1362_low_22
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 30 - 468
Target Start/End: Original strand, 6946089 - 6946527
Alignment:
| Q |
30 |
attacccaccttccgaatcaactccctattaaaccaccggttcccttcgacctcctccaactccattaaatctctccaccaccgagaagcaaaccatgga |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6946089 |
attacccaccttccgaatcaactccctattaaaccaccggttcccttcgacctcctccaactccattaaatctctccaccaccgagaagcaaaccatgga |
6946188 |
T |
|
| Q |
130 |
caagtctcccccaccactctacttttataaccacccttggcccatatttatcttctaacacctccttccacaacgaccgttaaccatcaagaagccgcca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6946189 |
caagtctcccccaccactctacttttataaccacccttggcccatatttatcttctaacacctccttccacaacgaccgttaaccatcaagaagccgcca |
6946288 |
T |
|
| Q |
230 |
tcttcatttagctaaaaggcgaacattagccaatttgacatctctcacccctagcccccctttacttcttggttggcacactttcctccacctcacacaa |
329 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6946289 |
tctccatttagctaaaaggcgaacattagccaatttgacatctctcacccctagcccccctttacttcttggttggcacactttcctccacctcacacaa |
6946388 |
T |
|
| Q |
330 |
caaatctggttgctaccacccactccaccccaaagaaactttcgttgaatagccaccaattttttaatgaccttggccggcatcttcaaaaatgtgagat |
429 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6946389 |
caaatctggttgctaccacccactccgccccaaagaaactttcgttgaatagccaccaattttttaatgaccttagccggcatcttcaaaaatgtgagat |
6946488 |
T |
|
| Q |
430 |
agaaaatggggaccgaatttaacaccgaattaaggagaa |
468 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
6946489 |
agaaaatggggaccgaatttaacaccgaattaaggagaa |
6946527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 451
Target Start/End: Complemental strand, 17777710 - 17777474
Alignment:
| Q |
214 |
catcaagaagccgccatcttcatttagctaaaaggcgaacattagccaatttgacatctctcacccctagcccccctttacttcttggttggcacacttt |
313 |
Q |
| |
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|||||||||||| |||| | |||||||||| ||| | || |||| | || |||| ||||||||||| ||||||||||||||||| ||||| || || || |
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| T |
17777710 |
catcaagaagcctccatttccatttagctagaagactaatattaacaaacttgatgtctctcaccccaagcccccctttacttctaggttgacaaacctt |
17777611 |
T |
|
| Q |
314 |
cctccacctcacacaacaaatctggttgctaccacccactccaccccaaagaaactttcgttgaatagccaccaattttttaatgaccttggccggcatc |
413 |
Q |
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|||||| | || |||||||||| || ||| | || || || |||||||| ||| | | ||||||| | ||| |||||| | || ||| |||||||| |
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| T |
17777610 |
actccacttaacccaacaaatcttctttctatc-cctacacctccccaaaggaacctcctttgaataccttccacctttttattcacgttgaccggcatc |
17777512 |
T |
|
| Q |
414 |
ttcaaaaatgtgagatagaaaatggggaccgaatttaa |
451 |
Q |
| |
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|||||||| | |||||||||||||| | ||||||||| |
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| T |
17777511 |
ttcaaaaaagaaagatagaaaatgggtatcgaatttaa |
17777474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 460
Target Start/End: Complemental strand, 29126741 - 29126540
Alignment:
| Q |
259 |
ccaatttgacatctctcacccctagcccccctttacttcttggttggcacactttcctccacctcacacaacaaatctggttgctaccacccactccacc |
358 |
Q |
| |
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||||||| | |||||||||||| || ||||| | |||||| ||||| || |||||| |||| |||| |||||||||| || ||| || | ||||| |
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|
| T |
29126741 |
ccaatttaatatctctcaccccaagacccccatgacttctaggttgacaaactttcgaccacttcacccaacaaatcttcttatgacccccaataccacc |
29126642 |
T |
|
| Q |
359 |
ccaaagaaactttcgttgaatagccaccaattttttaatgaccttggccggcatcttcaaaaatgtgagatagaaaatggggaccgaatttaacaccgaa |
458 |
Q |
| |
|
|||||||||| | | ||||||| || ||| || ||||| ||||| |||||||||||||||| | ||||| ||||| || | |||||||||||||||| |
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| T |
29126641 |
ccaaagaaacctcctttgaataccctccaccttgttaatcaccttaaccggcatcttcaaaaaggaaagataaaaaataggtatcgaatttaacaccgaa |
29126542 |
T |
|
| Q |
459 |
tt |
460 |
Q |
| |
|
|| |
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|
| T |
29126541 |
tt |
29126540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 30455201 - 30455145
Alignment:
| Q |
264 |
ttgacatctctcacccctagcccccctttacttcttggttggcacactttcctccac |
320 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| |||||||| || ||||||||| |
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|
| T |
30455201 |
ttgacatctctcaccccaagaccccctttacttctcggttggcaaaccttcctccac |
30455145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 336
Target Start/End: Complemental strand, 20988071 - 20987957
Alignment:
| Q |
222 |
agccgccatcttcatttagctaaaaggcgaacattagccaatttgacatctctcacccctagcccccctttacttcttggttggcacactttcctccacc |
321 |
Q |
| |
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||||||||| | || | ||||||||| | || |||||||||||| | ||||||||| || ||||| ||||||| ||| ||||| || | ||||||||| |
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| T |
20988071 |
agccgccatttccactaagctaaaagactaatattagccaatttaatatctctcacaccaagccctcctttacctctaggttgacaaaatttcctccaaa |
20987972 |
T |
|
| Q |
322 |
tcacacaacaaatct |
336 |
Q |
| |
|
| || |||||||||| |
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|
| T |
20987971 |
taacccaacaaatct |
20987957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 468
Target Start/End: Complemental strand, 44691997 - 44691937
Alignment:
| Q |
408 |
ggcatcttcaaaaatgtgagatagaaaatggggaccgaatttaacaccgaattaaggagaa |
468 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| | ||| | ||||||||||||||||| |
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|
| T |
44691997 |
ggcatcttcaaaaatgagagatagaaaatagggatagcattaatcaccgaattaaggagaa |
44691937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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