View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_low_24 (Length: 458)

Name: NF1362_low_24
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_low_24
NF1362_low_24
[»] chr1 (13 HSPs)
chr1 (269-448)||(38884929-38885114)
chr1 (18-78)||(38884877-38884937)
chr1 (78-147)||(39249984-39250055)
chr1 (79-147)||(46901856-46901926)
chr1 (79-130)||(34307278-34307329)
chr1 (76-147)||(19258793-19258866)
chr1 (83-130)||(2509028-2509075)
chr1 (84-130)||(10146971-10147017)
chr1 (213-273)||(34307132-34307192)
chr1 (213-273)||(28647490-28647549)
chr1 (79-130)||(28647353-28647404)
chr1 (213-266)||(19258674-19258726)
chr1 (218-266)||(39249864-39249911)
[»] chr3 (23 HSPs)
chr3 (79-147)||(29460660-29460730)
chr3 (79-147)||(29471512-29471582)
chr3 (79-147)||(34750019-34750089)
chr3 (79-147)||(38231293-38231363)
chr3 (76-147)||(51339904-51339975)
chr3 (79-130)||(22894680-22894731)
chr3 (76-145)||(36370461-36370532)
chr3 (76-130)||(21559558-21559612)
chr3 (76-130)||(30735635-30735689)
chr3 (78-147)||(39072394-39072465)
chr3 (78-130)||(43999988-44000040)
chr3 (87-147)||(20856272-20856334)
chr3 (213-268)||(38231429-38231484)
chr3 (77-130)||(36749404-36749457)
chr3 (76-147)||(46112065-46112138)
chr3 (77-124)||(50966129-50966175)
chr3 (77-124)||(51069264-51069310)
chr3 (78-145)||(39467224-39467293)
chr3 (213-270)||(30735493-30735549)
chr3 (82-147)||(48200688-48200755)
chr3 (221-269)||(51339782-51339829)
chr3 (86-132)||(29820437-29820483)
chr3 (213-269)||(29472946-29473001)
[»] chr2 (16 HSPs)
chr2 (76-147)||(3831018-3831089)
chr2 (79-147)||(33732569-33732639)
chr2 (79-147)||(36315561-36315631)
chr2 (82-147)||(44958116-44958183)
chr2 (76-130)||(16089819-16089873)
chr2 (205-268)||(37914236-37914299)
chr2 (76-147)||(37914357-37914430)
chr2 (79-147)||(6376354-6376424)
chr2 (77-130)||(14572993-14573046)
chr2 (213-269)||(36315698-36315754)
chr2 (216-270)||(33732709-33732762)
chr2 (213-278)||(16089958-16090022)
chr2 (213-265)||(3830900-3830951)
chr2 (213-269)||(37498861-37498917)
chr2 (79-126)||(24137240-24137287)
chr2 (78-147)||(37498986-37499057)
[»] chr6 (5 HSPs)
chr6 (76-130)||(3987045-3987099)
chr6 (79-147)||(14022934-14023004)
chr6 (77-147)||(15345780-15345850)
chr6 (77-130)||(3118187-3118240)
chr6 (77-108)||(7674598-7674629)
[»] chr4 (21 HSPs)
chr4 (76-130)||(28093236-28093290)
chr4 (77-147)||(46192357-46192429)
chr4 (79-147)||(49243815-49243885)
chr4 (77-130)||(21391095-21391148)
chr4 (78-147)||(6112629-6112700)
chr4 (79-130)||(3672274-3672325)
chr4 (214-268)||(46192497-46192551)
chr4 (77-147)||(7217763-7217835)
chr4 (79-147)||(45829378-45829448)
chr4 (210-271)||(45829254-45829314)
chr4 (213-273)||(44275843-44275902)
chr4 (77-132)||(35544910-35544965)
chr4 (77-130)||(44275704-44275757)
chr4 (214-268)||(49243953-49244006)
chr4 (219-270)||(7217909-7217959)
chr4 (213-268)||(21390955-21391009)
chr4 (83-125)||(43245522-43245564)
chr4 (213-266)||(35545050-35545102)
chr4 (77-130)||(52191340-52191393)
chr4 (76-116)||(25437039-25437079)
chr4 (218-270)||(28093093-28093144)
[»] chr7 (29 HSPs)
chr7 (78-130)||(26972343-26972395)
chr7 (79-142)||(34108426-34108491)
chr7 (77-147)||(36346685-36346757)
chr7 (78-130)||(7700617-7700669)
chr7 (79-147)||(15020282-15020350)
chr7 (79-130)||(7700023-7700074)
chr7 (79-130)||(7700221-7700272)
chr7 (79-130)||(7700419-7700470)
chr7 (79-147)||(13108148-13108218)
chr7 (79-130)||(28307635-28307686)
chr7 (79-130)||(42221103-42221154)
chr7 (76-130)||(31148287-31148341)
chr7 (85-147)||(23980137-23980201)
chr7 (79-132)||(30887700-30887753)
chr7 (83-130)||(21807462-21807509)
chr7 (79-147)||(5811284-5811354)
chr7 (79-130)||(45782800-45782851)
chr7 (219-268)||(36346564-36346612)
chr7 (218-270)||(26972200-26972251)
chr7 (224-280)||(29953559-29953614)
chr7 (213-271)||(13108284-13108341)
chr7 (87-145)||(28713685-28713746)
chr7 (84-147)||(38321014-38321079)
chr7 (218-271)||(28307491-28307543)
chr7 (84-117)||(42950156-42950189)
chr7 (213-269)||(5811162-5811217)
chr7 (82-130)||(34828069-34828116)
chr7 (100-141)||(36957450-36957493)
chr7 (213-269)||(46475162-46475217)
[»] chr8 (14 HSPs)
chr8 (79-147)||(36189216-36189286)
chr8 (80-130)||(44081781-44081831)
chr8 (79-128)||(42162598-42162647)
chr8 (82-130)||(12665347-12665395)
chr8 (79-130)||(30432339-30432390)
chr8 (76-130)||(10203661-10203715)
chr8 (76-147)||(33726008-33726081)
chr8 (77-146)||(18184551-18184622)
chr8 (78-130)||(31318804-31318856)
chr8 (78-147)||(43186026-43186097)
chr8 (87-145)||(11904861-11904922)
chr8 (219-269)||(36189358-36189407)
chr8 (219-268)||(10203808-10203856)
chr8 (213-270)||(18184690-18184746)
[»] chr5 (20 HSPs)
chr5 (78-130)||(13347127-13347179)
chr5 (79-147)||(2237276-2237346)
chr5 (79-130)||(39370927-39370978)
chr5 (76-130)||(40888082-40888136)
chr5 (77-147)||(1815737-1815809)
chr5 (79-147)||(19596188-19596258)
chr5 (79-130)||(33404576-33404627)
chr5 (90-130)||(14831555-14831595)
chr5 (76-147)||(4300664-4300737)
chr5 (77-130)||(27553513-27553566)
chr5 (78-130)||(9408179-9408231)
chr5 (218-270)||(40887939-40887990)
chr5 (78-145)||(17225318-17225385)
chr5 (213-268)||(19596067-19596122)
chr5 (88-147)||(41003970-41004031)
chr5 (218-268)||(2237419-2237468)
chr5 (216-270)||(31800698-31800751)
chr5 (218-268)||(39371070-39371119)
chr5 (219-268)||(13347272-13347320)
chr5 (218-271)||(14831687-14831739)
[»] scaffold0062 (1 HSPs)
scaffold0062 (83-130)||(6722-6769)
[»] scaffold0043 (2 HSPs)
scaffold0043 (83-147)||(87285-87350)
scaffold0043 (213-269)||(87161-87216)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 269 - 448
Target Start/End: Original strand, 38884929 - 38885114
Alignment:
Q  269 tttatgaaaacaagaatatgaatctatgtcaaagttgatgaggtttatcttagacaccgaatgagtagcttagcgatttttgagttaagatatcgaagta 368  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38884929 tttatcaaaacaagaatatgaatctatgtcaaagttgatgaggtttatcttagacaccgaatgagtagcttagcgatttttgagttaagatatcgaagga 38885028  T
Q  369 gttctatgttgaatgtcgcgttggatcccagctgctaaca------tatccattaacaatttgagcattacttttccgaccctatg 448  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||| ||||    
T  38885029 gttctatgttgaatgtcgcgttggatcccagctgctaacagtttaccatccattaacaatttaagcattacttttccgaccttatg 38885114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 38884877 - 38884937
Alignment:
Q  18 acttcgttgtatattatgaatgtattccccgaatgaattcattgaaaacatttttatcaaa 78  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38884877 acttcattgtatattatgaatgtattccccgaatgaattcattgaaaacatttttatcaaa 38884937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 39250055 - 39249984
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacaccc--acatatttgtgacatgtggc 147  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  39250055 agagctcttatacatgaaccatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggc 39249984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 46901926 - 46901856
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||  ||||||||||||||| |||||    
T  46901926 gagctcttatacatgaaccaccttaggtgacatacaccattttacaccaacacatatttgtgacacgtggc 46901856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 34307329 - 34307278
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  34307329 gagctcttatacataaaccaccttaggtggcatacacccttttacatccaca 34307278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 19258866 - 19258793
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccac--atatttgtgacatgtggc 147  Q
    |||||||| |||||||| ||||| || |||||||||||||| ||||||||||||  ||||||||||||||||||    
T  19258866 aaagagctattatacataaaccatctaaggtggcatacacctttttacacccacatatatttgtgacatgtggc 19258793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 2509028 - 2509075
Alignment:
Q  83 tcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  2509028 tcttatacatgaaccaccttaggtgacatacatccttttacacccaca 2509075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 10146971 - 10147017
Alignment:
Q  84 cttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||| |||||||||||||||||||||||||| || ||||||    
T  10146971 cttatacatggaccaccttaggtggcatacaccctttgacccccaca 10147017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 34307192 - 34307132
Alignment:
Q  213 cacatggg-gtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttat 273  Q
    |||||||| ||||||||||||||||||| ||| |||| ||||||| ||||||||||||||||    
T  34307192 cacatgggagtgtacataagaggtgtatgaaaaaagg-tgtctacctatctttttcctttat 34307132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 28647490 - 28647549
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttat 273  Q
    |||||||| ||||||| |||| ||||| ||| |||||||||||| ||||||||||||||||    
T  28647490 cacatgggatgtacatgagagatgtataaaa-aagggtgtctacctatctttttcctttat 28647549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 28647353 - 28647404
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||| ||||||||||||||||| |||| ||||||| | |||||||||||||    
T  28647353 gagctattatacatgaaccacctaaggttgcatacatctttttacacccaca 28647404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 19258726 - 19258674
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatcttttt 266  Q
    |||||||||||||||| |||| ||||| ||| |||||||||||| |||||||||    
T  19258726 cacatggggtgtacatgagagatgtat-aaaaaagggtgtctacctatcttttt 19258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 39249911 - 39249864
Alignment:
Q  218 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatcttttt 266  Q
    |||||||||||||||||||||| ||| || ||||||||| |||||||||    
T  39249911 ggggtgtacataagaggtgtatgaaa-aaaggtgtctacctatcttttt 39249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 29460660 - 29460730
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacata--tttgtgacatgtggc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  29460660 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggc 29460730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 29471512 - 29471582
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacata--tttgtgacatgtggc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  29471512 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggc 29471582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 34750089 - 34750019
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  34750089 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacacatatttgtgacacgtggc 34750019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 38231293 - 38231363
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  38231293 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 38231363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 51339975 - 51339904
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccacatatttgtgacatgtggc 147  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  51339975 aaagagctcttatacataaaccaccttaggtggcatacatccttttacacccacacatttgtgacacgtggc 51339904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 22894680 - 22894731
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894680 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 22894731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 36370532 - 36370461
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtg 145  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||  |||| ||||||||||||||    
T  36370532 aaagagctcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtg 36370461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 21559558 - 21559612
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  21559558 aaagagctcttatacataaaccatcttaggtggcatacacccttttacacccaca 21559612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 30735689 - 30735635
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  30735689 aaagagctcttatatatgaaccaccttagatggcatacacccttttacacccaca 30735635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 39072465 - 39072394
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacccacat--atttgtgacatgtggc 147  Q
    |||||| ||||||||||| |||||||| || |||||||||||||||||||||||  ||||||||||||||||    
T  39072465 agagctattatacatgaatcaccttagatgacatacacccttttacacccacatacatttgtgacatgtggc 39072394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 43999988 - 44000040
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  43999988 agagctcttatacatgaaccaccttaggtgtcatacacctttttacacccaca 44000040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 20856334 - 20856272
Alignment:
Q  87 atacatgaaccaccttaggtggcatacacccttttacaccc--acatatttgtgacatgtggc 147  Q
    ||||||||||||| |||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  20856334 atacatgaaccactttaggtggcatacacccttttacacccatacacatttgtgacatgtggc 20856272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 38231429 - 38231484
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  38231429 cacatggggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcc 38231484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 36749404 - 36749457
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||| || |||||||| |||||||||||||    
T  36749404 aagagctcttatacatgaaccaccttagatgtcatacacctttttacacccaca 36749457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 46112138 - 46112065
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttaca--cccacatatttgtgacatgtggc 147  Q
    |||||| |||||||||||||||| |||||||| |||||||| |||||||  | |||| ||||||||||||||||    
T  46112138 aaagagttcttatacatgaaccatcttaggtgacatacaccattttacatccacacacatttgtgacatgtggc 46112065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 50966129 - 50966175
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttaca 124  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||    
T  50966129 aagagctcttatacatgaac-atcttaggtggcatacacccttttaca 50966175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 51069264 - 51069310
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttaca 124  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||    
T  51069264 aagagctcttatacatgaac-atcttaggtggcatacacccttttaca 51069310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 39467293 - 39467224
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtg 145  Q
    |||||| |||| ||| ||||||| ||| || ||||||||||||||||||  |||||||||||||||||||    
T  39467293 agagctgttatccataaaccaccatagatgacatacacccttttacacccacacatatttgtgacatgtg 39467224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 30735549 - 30735493
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 270  Q
    ||||||| ||||||||||| ||||||| ||| |||||||||||| |||||||||||||    
T  30735549 cacatggagtgtacataagtggtgtatgaaa-aagggtgtctacctatctttttcctt 30735493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 48200688 - 48200755
Alignment:
Q  82 ctcttatacatgaaccaccttaggtggcatacacccttttacacccac--atatttgtgacatgtggc 147  Q
    ||||||| |||||| || ||||||||||||||||| ||||||| ||||  |||||||||||| |||||    
T  48200688 ctcttattcatgaatcatcttaggtggcatacacctttttacatccacatatatttgtgacacgtggc 48200755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 51339829 - 51339782
Alignment:
Q  221 gtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 269  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  51339829 gtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcct 51339782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 29820483 - 29820437
Alignment:
Q  86 tatacatgaaccaccttaggtggcatacacccttttacacccacata 132  Q
    |||||||  ||||||||||||||||||||| |||| |||||||||||    
T  29820483 tatacatagaccaccttaggtggcatacacactttgacacccacata 29820437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 29472946 - 29473001
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 269  Q
    |||||||||||| |||||| ||||||| ||| |||| ||||||| ||||||||||||    
T  29472946 cacatggggtgtgcataagtggtgtatgaaa-aaggatgtctacctatctttttcct 29473001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 3831089 - 3831018
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccacatatttgtgacatgtggc 147  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||    
T  3831089 aaagagcacttatacatgaaccaccttaggtgacatacacccttttacacccacacatttgtgacacgtggc 3831018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 33732569 - 33732639
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  33732569 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 33732639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 36315561 - 36315631
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  36315561 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 36315631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 44958116 - 44958183
Alignment:
Q  82 ctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  44958116 ctcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 44958183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 16089819 - 16089873
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16089819 aaagagctcttatacatgaaccaccttaagtggcatacacccttttacacccaca 16089873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 37914299 - 37914236
Alignment:
Q  205 taccttggcacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  37914299 taccctggtacatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 37914236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 37914430 - 37914357
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttaca--cccacatatttgtgacatgtggc 147  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||  | |||| ||||||||||||||||    
T  37914430 aaagagcttttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggc 37914357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 6376424 - 6376354
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||||||  |||| ||||||||||||||||    
T  6376424 gagctgttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggc 6376354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 14572993 - 14573046
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||    
T  14572993 aagagctcttatacataaaccaccttaggtggcatccacccttttacatccaca 14573046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 36315698 - 36315754
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 269  Q
    |||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  36315698 cacatgaggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcct 36315754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 33732709 - 33732762
Alignment:
Q  216 atggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 270  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  33732709 atggggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcctt 33732762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 16089958 - 16090022
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttatgaaaa 278  Q
    ||||||||||||||||||||||||||| ||| || ||||||||| ||||||||||||  |||||||    
T  16089958 cacatggggtgtacataagaggtgtatgaaa-aaaggtgtctacctatctttttcctaaatgaaaa 16090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 3830951 - 3830900
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttt 265  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  3830951 cacatggggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttt 3830900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 37498917 - 37498861
Alignment:
Q  213 cacatgggg-tgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 269  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  37498917 cacatggggatgtacataagaggtgtataaaa-aagggtgtctacctatctttttcct 37498861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 24137287 - 24137240
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc 126  Q
    ||||| |||||||| ||||||||||||||| ||||||||||| |||||    
T  24137287 gagctgttatacataaaccaccttaggtggtatacaccctttgacacc 24137240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 37499057 - 37498986
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttaca--cccacatatttgtgacatgtggc 147  Q
    |||||||||||| || ||||| ||||  ||||||||| |||||||||  | |||| ||||||||||||||||    
T  37499057 agagctcttatatatcaaccatcttaactggcatacatccttttacactcacacacatttgtgacatgtggc 37498986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 3987099 - 3987045
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3987099 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 3987045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 14022934 - 14023004
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  14022934 gagctattatacataaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 14023004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 15345850 - 15345780
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacccacatatttgtgacatgtggc 147  Q
    |||||||||||||||| ||||||||||||||||||| || |||||||||||| | |||||||||| |||||    
T  15345850 aagagctcttatacatcaaccaccttaggtggcatatactcttttacacccatacatttgtgacacgtggc 15345780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 3118240 - 3118187
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3118240 aagagctcttatatatgaaccaccttaggtggcatacacccttttacactcaca 3118187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 108
Target Start/End: Complemental strand, 7674629 - 7674598
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtgg 108  Q
    ||||||||||||||||||||||||||||||||    
T  7674629 aagagctcttatacatgaaccaccttaggtgg 7674598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 28093290 - 28093236
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28093290 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 28093236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 46192357 - 46192429
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  46192357 aagagctcttatacatgaatcaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggc 46192429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 49243815 - 49243885
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttaca--cccacatatttgtgacatgtggc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| ||||||||||||||||    
T  49243815 gagctcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggc 49243885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 21391148 - 21391095
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21391148 aagagctcttatacatgaaccaccttagatggcatacacccttttacacccaca 21391095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 6112629 - 6112700
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||  ||||||||||||||| |||||    
T  6112629 agagctcttatacatgaaccaccttagatggcatacaccattttacacccacacatatttgtgacacgtggc 6112700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 3672274 - 3672325
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3672274 gagctcttatacatgaaccaccttaggtggcatacacccttttacatccaca 3672325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 46192497 - 46192551
Alignment:
Q  214 acatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  46192497 acatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 46192551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 7217763 - 7217835
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||  |||| |||||||||| |||||    
T  7217763 aagagctcttatacataaaccaccttaggtggcatacaccctttaacacctacacacatttgtgacacgtggc 7217835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 45829448 - 45829378
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||||||||||||||||||| ||||||| |||||||| |||||||||  |||| ||||||||||||||||    
T  45829448 gagctcttatacatgaaccactttaggtgacatacacctttttacacccacacacatttgtgacatgtggc 45829378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 45829314 - 45829254
Alignment:
Q  210 tggcacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 271  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  45829314 tggcatatggggtgtacataa-aggtgtatcaaaaaagggtgtctacctatctttttccttt 45829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 44275843 - 44275902
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctttat 273  Q
    ||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||    
T  44275843 cacatggggtgtacataagaggtgtatgaaa-aagggtgtctatctatctttttcctttat 44275902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 35544910 - 35544965
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacccacata 132  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||    
T  35544910 aagagctcttatacatgaaccatcttaggtggtatacaccattttacatccacata 35544965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 44275704 - 44275757
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||| ||||    
T  44275704 aagagctcttatacataaaccaccttaggtggcatataccattttacactcaca 44275757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 49243953 - 49244006
Alignment:
Q  214 acatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    |||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  49243953 acatggagtgtacataagaggtgtatgaaa-aaggatgtctacatatctttttcc 49244006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 7217909 - 7217959
Alignment:
Q  219 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 270  Q
    ||||||||||||||||||||| ||| |||||||| ||| |||||||||||||    
T  7217909 gggtgtacataagaggtgtatgaaa-aagggtgtttacctatctttttcctt 7217959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 21391009 - 21390955
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    |||||| ||||||||||| |||||||| ||| |||||||||||| |||||||||||    
T  21391009 cacatgaggtgtacataaaaggtgtatgaaa-aagggtgtctacctatctttttcc 21390955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 43245522 - 43245564
Alignment:
Q  83 tcttatacatgaaccaccttaggtggcatacacccttttacac 125  Q
    |||||||||||||||| ||||| || |||||||||||||||||    
T  43245522 tcttatacatgaaccatcttagatgacatacacccttttacac 43245564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 35545050 - 35545102
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatcttttt 266  Q
    ||||||| ||||||||||| ||||||| ||| |||||||||||| |||||||||    
T  35545050 cacatggagtgtacataagtggtgtatgaaa-aagggtgtctacctatcttttt 35545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 52191393 - 52191340
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||| |||||||||| |||||||||||||||||| ||| ||| ||| |||||    
T  52191393 aagagcccttatacatggaccaccttaggtggcatataccttttaacagccaca 52191340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 25437079 - 25437039
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacc 116  Q
    ||||||| |||||||||| ||||||||||||| ||||||||    
T  25437079 aaagagcccttatacatggaccaccttaggtgacatacacc 25437039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 28093144 - 28093093
Alignment:
Q  218 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 270  Q
    ||||||||||||||| |||||| ||| |||| ||||||| |||||||||||||    
T  28093144 ggggtgtacataagaagtgtatgaaa-aaggatgtctacctatctttttcctt 28093093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 26972395 - 26972343
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26972395 agagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 26972343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 34108426 - 34108491
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacat 142  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  34108426 gagctcttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacat 34108491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 36346757 - 36346685
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacaccc--acatatttgtgacatgtggc 147  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  36346757 aagagctcttatacataaaccatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggc 36346685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 7700669 - 7700617
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  7700669 agagctcttatacataaaccaccttagatggcatacacccttttacacccaca 7700617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 15020282 - 15020350
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacatatttgtgacatgtggc 147  Q
    ||||| |||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  15020282 gagctgttatacataaaccaccataggtggcatacaaccttttacacccacacatttgtgacatatggc 15020350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 7700074 - 7700023
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  7700074 gagctcttatacataaaccaccttagatggcatacacccttttacacccaca 7700023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 7700272 - 7700221
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  7700272 gagctcttatacataaaccaccttagatggcatacacccttttacacccaca 7700221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 7700470 - 7700419
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  7700470 gagctcttatacataaaccaccttagatggcatacacccttttacacccaca 7700419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 13108148 - 13108218
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||    
T  13108148 gagctgttatacataaaccaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggc 13108218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 28307686 - 28307635
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28307686 gagctcttatacataaactaccttaggtggcatacacccttttacacccaca 28307635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 42221154 - 42221103
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  42221154 gagctcttatacatgaaccaccttaggtggcatacacttttttacacccaca 42221103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 31148287 - 31148341
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  31148287 aaagggcttttatacatgaaccatcttaggtggcatacacccttttacacccaca 31148341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 23980137 - 23980201
Alignment:
Q  85 ttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    |||||||| ||||||| |||||||||||||||||||||||||  |||| ||||||||||||||||    
T  23980137 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggc 23980201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 30887700 - 30887753
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacata 132  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||||||||||    
T  30887700 gagctcttatacatgaacaatcttaggtggcatacacacttttacacccacata 30887753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 21807509 - 21807462
Alignment:
Q  83 tcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  21807509 tcttatacatgaaccaccttagatggcatacaccattttacacccaca 21807462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 5811354 - 5811284
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||| |||||||| ||||||| ||||||||||||| |||||| ||||  |||| ||||||||||||||||    
T  5811354 gagctattatacataaaccaccataggtggcatacatcctttttcacccacacacatttgtgacatgtggc 5811284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 45782851 - 45782800
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||| |||||| |||||||||||||| | |||||||||||||    
T  45782851 gagctcttatacatcaaccactttaggtggcatacatcattttacacccaca 45782800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 36346612 - 36346564
Alignment:
Q  219 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  36346612 gggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcc 36346564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 26972251 - 26972200
Alignment:
Q  218 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 270  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||||||    
T  26972251 ggggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcctt 26972200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 29953614 - 29953559
Alignment:
Q  224 tacataagaggtgtatcaaagaagggtgtctacatatctttttcctttatgaaaaca 280  Q
    ||||||||| |||||| ||| |||||||||||| |||||||||||||| ||||||||    
T  29953614 tacataagaagtgtatgaaa-aagggtgtctacctatctttttcctttttgaaaaca 29953559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 13108284 - 13108341
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 271  Q
    |||||| ||||||||| | |||||||| ||| |||||||||||| ||||||||||||||    
T  13108284 cacatgaggtgtacatgaaaggtgtataaaa-aagggtgtctacctatctttttccttt 13108341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 28713685 - 28713746
Alignment:
Q  87 atacatgaaccaccttaggtggcatacacc-cttttacacccacatat--ttgtgacatgtg 145  Q
    |||||| ||||||||||||||||||| ||| ||| |||||||||||||  ||||||||||||    
T  28713685 atacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtg 28713746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 38321014 - 38321079
Alignment:
Q  84 cttatacatgaaccaccttaggtggcatacacccttttacacccacat--atttgtgacatgtggc 147  Q
    ||||||||| ||||| ||||||||||||||||  ||| ||||||||||  | ||||||||||||||    
T  38321014 cttatacattaaccatcttaggtggcatacacattttaacacccacatacaattgtgacatgtggc 38321079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 28307543 - 28307491
Alignment:
Q  218 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 271  Q
    |||||||||||||||||||||| ||| || | ||||||| ||||||||||||||    
T  28307543 ggggtgtacataagaggtgtatgaaa-aaagatgtctacctatctttttccttt 28307491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 42950189 - 42950156
Alignment:
Q  84 cttatacatgaaccaccttaggtggcatacaccc 117  Q
    |||| |||||||||||||||||||||||||||||    
T  42950189 cttagacatgaaccaccttaggtggcatacaccc 42950156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 5811217 - 5811162
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 269  Q
    |||||| |||||||||  ||||||||| ||| |||||||||||| ||||||||||||    
T  5811217 cacatgaggtgtacatgggaggtgtataaaa-aagggtgtctacctatctttttcct 5811162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 34828069 - 34828116
Alignment:
Q  82 ctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||| |||||    
T  34828069 ctcttatacatgaaccaccttgggt-gcatacatccttttacatccaca 34828116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 36957450 - 36957493
Alignment:
Q  100 cttaggtggcatacacccttttacaccc--acatatttgtgaca 141  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||    
T  36957450 cttaggtggcatacacccttttacatccatacatatttgtgaca 36957493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 46475162 - 46475217
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 269  Q
    |||||| | ||||||| |||||||||| ||| |||||||||||| ||||||||||||    
T  46475162 cacatgagatgtacatgagaggtgtataaaa-aagggtgtctacctatctttttcct 46475217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 36189216 - 36189286
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccacat--atttgtgacatgtggc 147  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  36189216 gagctcttatacatgaaccatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggc 36189286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 44081781 - 44081831
Alignment:
Q  80 agctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44081781 agctcttatacatgaaccatcttaggtggcatacacccttttacacccaca 44081831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 42162598 - 42162647
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacaccca 128  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42162598 gagctcttatacatgaaccaccttaggtgtcatacacccttttacaccca 42162647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 12665347 - 12665395
Alignment:
Q  82 ctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12665347 ctcttatacatgaaccaccttaggtggcatacacccttttacactcaca 12665395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 30432339 - 30432390
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  30432339 gagctcttatacatgaaccaccttagatggcatacacccttttatacccaca 30432390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 10203661 - 10203715
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||| ||||||||||||||||||||||||| |||||| ||||||||| |||||    
T  10203661 aaagagttcttatacatgaaccaccttaggtgacatacatccttttacatccaca 10203715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 33726008 - 33726081
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccac--atatttgtgacatgtggc 147  Q
    |||||| | |||||||| |||||| |||||||||||||||| ||||||||||||  | ||||||||||||||||    
T  33726008 aaagagttgttatacataaaccactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggc 33726081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 18184551 - 18184622
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttaca--cccacatatttgtgacatgtgg 146  Q
    |||| |||||||| ||||||||||||| ||| ||||||||||||||||  | ||||||||||||||| ||||    
T  18184551 aagaactcttatatatgaaccaccttaagtgacatacacccttttacatccacacatatttgtgacacgtgg 18184622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 31318804 - 31318856
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||| |||||    
T  31318804 agagctcttatacatgaaccaccttaggtggcatataactttttacatccaca 31318856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 43186026 - 43186097
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    |||| |||||||||| |||||| |||||||||||| || ||||||||||  |||| |||||||| |||||||    
T  43186026 agagttcttatacatcaaccactttaggtggcatatactcttttacacctgcacacatttgtgatatgtggc 43186097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 11904861 - 11904922
Alignment:
Q  87 atacatgaaccaccttaggtggcatacacc-cttttacacccacatat--ttgtgacatgtg 145  Q
    |||||| ||||||||||||||||||| ||| ||| |||||||||||||  ||||||||||||    
T  11904861 atacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtg 11904922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 36189358 - 36189407
Alignment:
Q  219 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 269  Q
    ||||||||||||| ||||||| ||| |||||||||||| ||||||||||||    
T  36189358 gggtgtacataagtggtgtatgaaa-aagggtgtctacctatctttttcct 36189407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 10203808 - 10203856
Alignment:
Q  219 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    ||||||||||||||| ||||| ||| |||||||||||| |||||||||||    
T  10203808 gggtgtacataagagatgtatgaaa-aagggtgtctacctatctttttcc 10203856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 18184690 - 18184746
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 270  Q
    |||||| ||||||||||| |||||||| ||| |||| ||||||| |||||||||||||    
T  18184690 cacatgaggtgtacataaaaggtgtatgaaa-aaggatgtctacctatctttttcctt 18184746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 13347127 - 13347179
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13347127 agagcttttatacatgaaccaccttaggtggcatacacccttttacacccaca 13347179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 2237276 - 2237346
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||    
T  2237276 gagcttttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacacgtggc 2237346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 39370927 - 39370978
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39370927 gagctcttatacatgaaccaccttagatggcatacacccttttacacccaca 39370978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 40888136 - 40888082
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  40888136 aaagagctcttatacataaaccaccttaggtggcatacactcttttacacccaca 40888082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 1815809 - 1815737
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttaca--cccacatatttgtgacatgtggc 147  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||  | ||||||||||||||| |||||    
T  1815809 aagagctcttatacatgaaccatcttaggtgacatacacccttttacatccacacatatttgtgacacgtggc 1815737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 19596258 - 19596188
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacaccca--catatttgtgacatgtggc 147  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| |||  || ||||||||||||||||    
T  19596258 gagctgttatacatgaaccaccttaggtggcatacacctttttacatccacgcacatttgtgacatgtggc 19596188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 33404627 - 33404576
Alignment:
Q  79 gagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  33404627 gagctcttatacatgaaccaccttaggtgccatacacacttttacacccaca 33404576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 14831555 - 14831595
Alignment:
Q  90 catgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14831555 catgaaccaccttaggtggcatacacccttttacacccaca 14831595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 4300737 - 4300664
Alignment:
Q  76 aaagagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtggc 147  Q
    |||||||||||||||||||||||  ||||||| |||| | |||||||||||  |||||||||||||||| ||||    
T  4300737 aaagagctcttatacatgaaccattttaggtgacatatatccttttacacccacacatatttgtgacatatggc 4300664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 27553566 - 27553513
Alignment:
Q  77 aagagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||||||||||  |||||||||||| ||| |||||||||||||    
T  27553566 aagagctcttatacatgaaccattttaggtggcatataccattttacacccaca 27553513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 9408231 - 9408179
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||    
T  9408231 agagctcttatacatgaaccacctcaggtgacatacgcccttttacactcaca 9408179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 40887990 - 40887939
Alignment:
Q  218 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 270  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  40887990 ggggtgtacataagaggtgtatgaaa-aagggtgtctacctatctttttcctt 40887939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 17225318 - 17225385
Alignment:
Q  78 agagctcttatacatgaaccaccttaggtggcatacacccttttacacc--cacatatttgtgacatgtg 145  Q
    |||||||||||||||||||||| |||||||||||  || ||||||||||  |||| ||||||||||||||    
T  17225318 agagctcttatacatgaaccactttaggtggcat--actcttttacacccacacacatttgtgacatgtg 17225385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 19596122 - 19596067
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||| |||||||||||    
T  19596122 cacatggggtgtacataagaggtatttcaaaaaaggatgtctacctatctttttcc 19596067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 41004031 - 41003970
Alignment:
Q  88 tacatgaaccaccttaggtggcatacacccttttacaccc--acatatttgtgacatgtggc 147  Q
    |||||||||||| ||||||||||||||||||||||||| |  ||| |||| |||||||||||    
T  41004031 tacatgaaccactttaggtggcatacacccttttacactcatacacatttatgacatgtggc 41003970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 2237419 - 2237468
Alignment:
Q  218 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||||    
T  2237419 ggggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcc 2237468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 31800698 - 31800751
Alignment:
Q  216 atggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcctt 270  Q
    |||||||||||| ||||||||||| ||| |||||||||| | |||||||||||||    
T  31800698 atggggtgtacacaagaggtgtatgaaa-aagggtgtctgcctatctttttcctt 31800751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 39371070 - 39371119
Alignment:
Q  218 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    ||||||||||||||| |||||| ||| |||||||||||| |||||||||||    
T  39371070 ggggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcc 39371119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 13347272 - 13347320
Alignment:
Q  219 gggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcc 268  Q
    |||||||||||||| |||||| ||| |||||||||||| |||||||||||    
T  13347272 gggtgtacataagaagtgtatgaaa-aagggtgtctacctatctttttcc 13347320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 14831687 - 14831739
Alignment:
Q  218 ggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttccttt 271  Q
    ||||||||||||||| |||||| ||| |||||||| ||| ||||||||||||||    
T  14831687 ggggtgtacataagaagtgtatgaaa-aagggtgtttacctatctttttccttt 14831739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 6722 - 6769
Alignment:
Q  83 tcttatacatgaaccaccttaggtggcatacacccttttacacccaca 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6722 tcttatacatgaaccaccttaggtggcatacacccttttacacccaca 6769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 87350 - 87285
Alignment:
Q  83 tcttatacatgaaccaccttaggtggcatacacccttttacacc-cacatatttgtgacatgtggc 147  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| |||||    
T  87350 tcttatacatgaaccaccttaggtggcatacacccttgtacaccacacacatttgtgacacgtggc 87285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 87216 - 87161
Alignment:
Q  213 cacatggggtgtacataagaggtgtatcaaagaagggtgtctacatatctttttcct 269  Q
    |||||||||||||||||| |||||||| ||| || ||||||||| ||||||||||||    
T  87216 cacatggggtgtacataaaaggtgtatgaaa-aaaggtgtctacctatctttttcct 87161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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