View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_27 (Length: 435)
Name: NF1362_low_27
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 5302999 - 5302684
Alignment:
| Q |
16 |
atcatctaagtccaaattcattagtattaattttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgtannnnnnnat |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5302999 |
atcatctaagtccaaattcattagtatt----ttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgtatttttttag |
5302904 |
T |
|
| Q |
116 |
taagaggtttttagacctatcgttgcctcagtattaacttcatctttctccagttgattatctcttcccacacccgcagcagcactatagccattcacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5302903 |
taagaggtttttagacctatcgttgcctcagtattagcttcatctttctccagttgattatctcttcccacacccacagcagcactatagccattcacaa |
5302804 |
T |
|
| Q |
216 |
ataatgccacaacaaggacaagcagaacaagtgaagcagtagttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5302803 |
ataatgccacaacaaggacaagcagaacaagtgaagcagtagttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaac |
5302704 |
T |
|
| Q |
316 |
gtggccttgatggtcataga |
335 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
5302703 |
gtggccttgatggttataga |
5302684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 256
Target Start/End: Complemental strand, 5297437 - 5297332
Alignment:
| Q |
154 |
ttcatctttctccagttgattatctcttcccacacccgcagcag---cactatagccattcacaaataatgccacaacaaggacaagcagaacaagtgaa |
250 |
Q |
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|||||||||| ||||||||||| ||||| | ||||| |||||| ||||||||||||||| || |||||||||| ||||||||| |||||||||||| |
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| T |
5297437 |
ttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaactagaacaagtgaa |
5297338 |
T |
|
| Q |
251 |
gcagta |
256 |
Q |
| |
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||||| |
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| T |
5297337 |
acagta |
5297332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 126 - 337
Target Start/End: Complemental strand, 54728230 - 54728020
Alignment:
| Q |
126 |
ttagacctatcgttgcctcagtattaacttcatctttctccagttgattatctcttcccacacccgcagcagcactatagccattcacaaataatgccac |
225 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
54728230 |
ttagacctatcgttgcctcagtattagcttcatctttctccagttgattatctcttcccacacccgcagcaacactatagccattcacaaa-aatgccac |
54728132 |
T |
|
| Q |
226 |
aacaaggacaagcagaacaagtgaagcagtagttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaacgtggccttga |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728131 |
aacaaggacaagcagaacaagtgaagcagtagttttttgtcatagtgtgcaatatatgaatgaatattatcaagatctatattaattaacgtggccttga |
54728032 |
T |
|
| Q |
326 |
tggtcatagaag |
337 |
Q |
| |
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|||| ||||||| |
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| T |
54728031 |
tggttatagaag |
54728020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 54728608 - 54728522
Alignment:
| Q |
16 |
atcatctaagtccaaattcattagtattaattttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgta |
106 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728608 |
atcatctaagttcaaattcattagtatt----ttctgggtgaagttgagaaaacttttagttcaacccacctaaattgaaattcaactgta |
54728522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 151 - 280
Target Start/End: Complemental strand, 54721287 - 54721153
Alignment:
| Q |
151 |
aacttcatctttctccagttgattatctcttcccacacccgcagcag---cactatagccattcacaaataatgccacaacaaggacaagcagaacaagt |
247 |
Q |
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||||||||||||| ||||||||||| ||||| | ||||| |||||| ||||||||||||||| || |||||||||| |||||||||| ||||||||| |
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| T |
54721287 |
aacttcatctttcaccagttgattagctcttacttcaccctcagcagaagcactatagccattcagaattaatgccacagcaaggacaagtagaacaagt |
54721188 |
T |
|
| Q |
248 |
gaagcagta--gttttttgtcatagtgtgcaatat |
280 |
Q |
| |
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||| ||||| | |||||| |||||||| |||||| |
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| T |
54721187 |
gaaacagtactggtttttgccatagtgtacaatat |
54721153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 54714356 - 54714270
Alignment:
| Q |
153 |
cttcatctttctccagttgattatctcttcccacac---ccgcagcagcactatagccattcacaaataatgccacaacaaggacaa |
236 |
Q |
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||||||||||| ||||||||||| ||||||| ||| | |||||||||||||||||||| | ||||||||||||| ||||||||| |
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| T |
54714356 |
cttcatctttcaccagttgattagctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaa |
54714270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 54726977 - 54726863
Alignment:
| Q |
151 |
aacttcatctttctccagttgattatctcttcccacacccgcagcagcactatagccattcaca---aataatgccacaacaaggacaagcagaacaagt |
247 |
Q |
| |
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||||||||||||||| |||||||| ||||||| ||||| || ||||||| || ||||||| | ||||||| |||||||| ||||| ||||||| | |
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| T |
54726977 |
aacttcatctttctcatgttgattacctcttccttcaccctcaacagcactgtacccattcagaattaataatgtcacaacaaagacaactagaacaaat |
54726878 |
T |
|
| Q |
248 |
gaagcagtagttttt |
262 |
Q |
| |
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|||||||| |||||| |
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| T |
54726877 |
gaagcagtggttttt |
54726863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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