View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_33 (Length: 411)
Name: NF1362_low_33
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_33 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: scaffold0020 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 135966 - 136235
Alignment:
| Q |
13 |
aatataaaacacaagtgaagaattaatcaggaaacataattcatccgatggaaaacaatataagcatgtacttggaacttcataactgtcggctcgtaat |
112 |
Q |
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| T |
135966 |
aatataaaacacaatcgaagaattaatcaggaaagataattcatctgatggaaaacaatataagcatgtatttggaacttcataactgtcggctcgtaat |
136065 |
T |
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| Q |
113 |
gcaatttcctacgaagacattttacacatcctataaactcagcacctttcaatatgatactcaaatagaaccaaaaatataagcattaaaagatttataa |
212 |
Q |
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| T |
136066 |
gcaatttccttcgaagacattgtacacatcctataaactcagcacctttcaatatgatactcaaatagaaacaaaaatataagcattaaactatttataa |
136165 |
T |
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| Q |
213 |
gacattctagaaaacacagtccaggaaagacaaaattgaaacatactacatcagacatatcacaatggag |
282 |
Q |
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| T |
136166 |
gacattctagaaaacacagtccaggaaagacaaaattgaaacatactacatcagacatatcacaatggag |
136235 |
T |
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Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 154 - 279
Target Start/End: Original strand, 20867447 - 20867572
Alignment:
| Q |
154 |
gcacctttcaatatgatactcaaatagaaccaaaaatataagcattaaaagatttataagacattctagaaaacacagtccaggaaagacaaaattgaaa |
253 |
Q |
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| T |
20867447 |
gcacctttcaatatgctacgcaaataaaaataacaatataagtatcaaaagattcgtaagacattctagaatatacagtccaggaaagacagaattgaaa |
20867546 |
T |
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| Q |
254 |
catactacatcagacatatcacaatg |
279 |
Q |
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| T |
20867547 |
catactacatcagacatatcacaatg |
20867572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 51482503 - 51482430
Alignment:
| Q |
211 |
aagacattctagaaaacacagtccaggaaagac--aaaattgaaacatactacatcagacatatcacaatggag |
282 |
Q |
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|||||||||||||||| |||| ||||||||||| | ||||||| |||||| |||||||||||| ||| ||||| |
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| T |
51482503 |
aagacattctagaaaaaacaggccaggaaagacagagaattgaatcatactgcatcagacatattacagtggag |
51482430 |
T |
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