View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_low_34 (Length: 408)

Name: NF1362_low_34
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_low_34
NF1362_low_34
[»] scaffold0003 (6 HSPs)
scaffold0003 (95-174)||(34871-34950)
scaffold0003 (95-174)||(41541-41620)
scaffold0003 (340-399)||(34777-34836)
scaffold0003 (340-399)||(41447-41506)
scaffold0003 (273-309)||(41497-41533)
scaffold0003 (273-309)||(34827-34863)
[»] chr6 (5 HSPs)
chr6 (95-174)||(27445738-27445817)
chr6 (340-399)||(27445852-27445911)
chr6 (81-153)||(20909203-20909274)
chr6 (81-153)||(20923651-20923722)
chr6 (273-309)||(27445825-27445861)
[»] chr8 (2 HSPs)
chr8 (81-194)||(42312276-42312388)
chr8 (81-160)||(15580653-15580733)
[»] chr1 (2 HSPs)
chr1 (101-194)||(47247045-47247137)
chr1 (81-191)||(41326063-41326172)
[»] chr2 (1 HSPs)
chr2 (340-399)||(14455584-14455643)


Alignment Details
Target: scaffold0003 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 34950 - 34871
Alignment:
Q  95 aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact 174  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  34950 aactgggggtgttcattccttgaagcatgaaaacaacaaaggctatgaaaggtgactttttatgatctaaatgaaatact 34871  T

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Target: scaffold0003; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 41620 - 41541
Alignment:
Q  95 aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact 174  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  41620 aactgatggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact 41541  T

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Target: scaffold0003; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 34836 - 34777
Alignment:
Q  340 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattat 399  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  34836 aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgctgctatagtattat 34777  T

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Target: scaffold0003; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 41506 - 41447
Alignment:
Q  340 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattat 399  Q
    |||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||    
T  41506 aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgttgatatagtattat 41447  T

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Target: scaffold0003; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 41533 - 41497
Alignment:
Q  273 tgctgctatattaattttgaagaattaaagtgttgct 309  Q
    |||||||||||||||||||||||||||||||| ||||    
T  41533 tgctgctatattaattttgaagaattaaagtgctgct 41497  T

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Target: scaffold0003; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 34863 - 34827
Alignment:
Q  273 tgctgctatattaattttgaagaattaaagtgttgct 309  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  34863 tgctgctatattagttttgaagaattaaagtgctgct 34827  T

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Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 27445738 - 27445817
Alignment:
Q  95 aactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatact 174  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  27445738 aactgatggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact 27445817  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 27445852 - 27445911
Alignment:
Q  340 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattat 399  Q
    |||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||    
T  27445852 aagtgctgctatattaattttgactaagtcaaatcaaccaaagtgttgatatagtattat 27445911  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 20909274 - 20909203
Alignment:
Q  81 actcttgctataccaactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgacttt 153  Q
    |||||||||| || ||||| |||||||||||| ||||||| |||||||||||||   ||||||||||||||||    
T  20909274 actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aatataaaaggtgacttt 20909203  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 20923722 - 20923651
Alignment:
Q  81 actcttgctataccaactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgacttt 153  Q
    |||||||||| || ||||| |||||||||||| ||||||| |||||||||||||   ||||||||||||||||    
T  20923722 actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aatataaaaggtgacttt 20923651  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 27445825 - 27445861
Alignment:
Q  273 tgctgctatattaattttgaagaattaaagtgttgct 309  Q
    |||||||||||||||||||||||||||||||| ||||    
T  27445825 tgctgctatattaattttgaagaattaaagtgctgct 27445861  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 42312388 - 42312276
Alignment:
Q  81 actcttgctataccaactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagt 180  Q
    |||||||||  || ||||| |||||||||||| |||||||||||||| ||||||   |||||||||||||||| | ||||||| |||||||||||||||     
T  42312388 actcttgctggacaaactgggggtgttcattcattgaagcaggaaaagaacaaaaa-tataaaaggtgactttctctgatgtagatgaaatactatgagc 42312290  T
Q  181 gaacttatacatgt 194  Q
    ||| ||||||||||    
T  42312289 gaaattatacatgt 42312276  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 15580733 - 15580653
Alignment:
Q  81 actcttgctataccaactgagggtgttcattccttgaagcaggaaaa-caacaaaggctataaaaggtgactttttatgat 160  Q
    |||||||||| |  ||||| || ||||| ||| || ||||||||||| |||||||||||| ||||||||||||||| ||||    
T  15580733 actcttgctagattaactggggttgttctttcattaaagcaggaaaagcaacaaaggctacaaaaggtgactttttctgat 15580653  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 47247045 - 47247137
Alignment:
Q  101 gggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagtgaacttatacatgt 194  Q
    |||||||||||| |||||||||||||||||||||   |||||||||||||||| ||||||||| |||||||||||| || ||| ||||||||||    
T  47247045 gggtgttcattcattgaagcaggaaaacaacaaaaa-tataaaaggtgactttctatgatgtagatgaaatactataagcgaaattatacatgt 47247137  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 41326172 - 41326063
Alignment:
Q  81 actcttgctataccaactgagggtgttcattccttgaagcaggaaaacaacaaaggctataaaaggtgactttttatgatgtaaatgaaatactatgagt 180  Q
    |||||||||| || ||||| |||||||||||| ||||||| |||||||||||||    ||||||||||||||| ||||||||| |||||| ||||||||     
T  41326172 actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aaaataaaaggtgactttctatgatgtagatgaaaaactatgagc 41326074  T
Q  181 gaacttataca 191  Q
    ||| |||||||    
T  41326073 gaaattataca 41326063  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 14455643 - 14455584
Alignment:
Q  340 aagtgctgctatattaattttgaccaagtcaaatcaaccaaagagctgctatagtattat 399  Q
    ||||| |||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  14455643 aagtgttgctatattaattttgattaagtcaaatcaaccaaagtgctgctatagtattat 14455584  T

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