View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1362_low_35 (Length: 407)
Name: NF1362_low_35
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_35 |
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| [»] scaffold0020 (1 HSPs) |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: scaffold0020 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 135592 - 135989
Alignment:
| Q |
8 |
cgaataatatcccagagcgcaccatctaaactattttcgtgatgaactgaatcaaccaccttcgcatcacataatccactttcattttccatgactcgaa |
107 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135592 |
cgaaaaatatcccagagagcaccatctaaactattttcgtgatgaactgaatcaaccaccttcgcatcacataatccactttcattttccatgactcgaa |
135691 |
T |
|
| Q |
108 |
cactattttggtcatctgaagcagtcatgggagaagacagattatcaaacccgtcaacattggtctctccatcctgattatcaccaattagtagctccct |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135692 |
cactattttgctcatctgaagcagtcatgggagaagacagattatcaagcccgtcaacattggtctctccatcctgattatcaccaattagtagctccct |
135791 |
T |
|
| Q |
208 |
cttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccactttagcaatatgagtcaacacatttacctaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
135792 |
cttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccac-ttagcaatatgagtcaacacatttacctaa |
135890 |
T |
|
| Q |
308 |
agagccaaattgtaaagaaacaaaacaacatttcattatccacataatagagtatgcactcagacacaaatcaaaaaatataaaacacaagtgaagaatt |
407 |
Q |
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| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
135891 |
aaagccaaattgtaaagaaacagaacaacatttcatcatccaca-aatagagtatgcactcagacacaaatcataaaatataaaacacaatcgaagaatt |
135989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 8 - 318
Target Start/End: Original strand, 20866848 - 20867155
Alignment:
| Q |
8 |
cgaataatatcccagagcgcaccatctaaactattttcgtgatgaactgaatcaaccaccttcgcatcacataatccactttcattttccatgactcgaa |
107 |
Q |
| |
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|||| |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| || |
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| T |
20866848 |
cgaaaaatatcccagtgagcaccatctaaactattttcttgatgaactgaatcaaccaccttcgcatcacacaatccacttccattttccacgacatcaa |
20866947 |
T |
|
| Q |
108 |
cactattttggtcatctgaagcagtcatgggagaagacagattatcaaacccgtcaacattggtctctccatcctgattatcaccaattagtagctccct |
207 |
Q |
| |
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| ||||||| |||||||||||| | | || ||||||| ||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
20866948 |
cgctatttttctcatctgaagcaattacggaagaagaccgattatcaagcctgtcaacattggtctctccatcttgattatcacca---tgtagctccct |
20867044 |
T |
|
| Q |
208 |
cttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccactttagcaatatgagtcaacacatttacctaa |
307 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20867045 |
cttgtcttgctcaaggtgcttttctgttaattttttaattgcagtaatgctcacagtttccagttccactttagcaacatgagtcaacacatttacctaa |
20867144 |
T |
|
| Q |
308 |
agagccaaatt |
318 |
Q |
| |
|
| ||||||||| |
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|
| T |
20867145 |
aaagccaaatt |
20867155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 161 - 332
Target Start/End: Complemental strand, 27398502 - 27398335
Alignment:
| Q |
161 |
tcaacattggtctctccatcctgattatcaccaattagtagctccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactct |
260 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |
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| T |
27398502 |
tcaacattggtctctccatcctgaatatcaccat---gtagctccctcttgtcttgctcaaggtgcttttgtttcaatttcttaattgcgtcactactca |
27398406 |
T |
|
| Q |
261 |
cagtttccagttccactttagcaatatgagtcaacacatttacctaaagagccaaattgtaaagaaacaaaa |
332 |
Q |
| |
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|| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |
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| T |
27398405 |
cacgatccagttttgattcagcaatatgagtcaacacatttacctaaa-agccaaattgtaaaaaaaaaaaa |
27398335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 305
Target Start/End: Complemental strand, 43162675 - 43162573
Alignment:
| Q |
203 |
tccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccactttagcaatatgagtcaacacattta |
302 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| ||||||||||||| || |||| ||||| || ||||||||||||||| ||||| ||||||||||||| |
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| T |
43162675 |
tccctcttatcttgctcaaggtgcttctgtctcaatttcttaatgacattaatttcctcaggtttcagttccactttagcgatatgcgtcaacacattta |
43162576 |
T |
|
| Q |
303 |
cct |
305 |
Q |
| |
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||| |
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|
| T |
43162575 |
cct |
43162573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 90 - 308
Target Start/End: Complemental strand, 51483047 - 51482832
Alignment:
| Q |
90 |
cattttccatgactcgaacactattttggtcatctgaagcagtcatgggagaagacagattatcaaacccgtcaacattggtctctccatcctgattatc |
189 |
Q |
| |
|
|||||||||| ||||||||||||||||| || |||||| || | |||| |||||| |||||||||| |||||| |||||||||||||| |||||||| |
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| T |
51483047 |
cattttccataactcgaacactattttgctcgtctgaaacatttatggaagaagatgaattatcaaacatgtcaacgttggtctctccatcttgattatc |
51482948 |
T |
|
| Q |
190 |
accaattagtagctccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccactttagcaatatga |
289 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||| | ||||| || || || ||||| |||||||||| |
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| T |
51482947 |
accat---gtagctccctcttgtcttgctcaaggtgcttttgtgtcagtttctcaatggcagcaatgccctcagatttcaatttcacttcagcaatatga |
51482851 |
T |
|
| Q |
290 |
gtcaacacatttacctaaa |
308 |
Q |
| |
|
||||||||||||||||||| |
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| T |
51482850 |
gtcaacacatttacctaaa |
51482832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 91 - 315
Target Start/End: Complemental strand, 51499883 - 51499665
Alignment:
| Q |
91 |
attttccatgactcgaacactattttggtcatctgaagcagtcatgggagaagacagattatcaaacccgtcaacattggtctctccatcctgattatca |
190 |
Q |
| |
|
||||||||||||| |||| | ||||| || ||||||||| | |||| ||| || |||||||| | || |||| ||||||||||||||||||||||| |
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|
| T |
51499883 |
attttccatgactggaacgcaatttttctcgtctgaagcatttatggaagatga---attatcaagcttgttaacagtggtctctccatcctgattatca |
51499787 |
T |
|
| Q |
191 |
ccaattagtagctccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccactttagcaatatgag |
290 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || || ||| | || || ||||| ||||||||||| |
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|
| T |
51499786 |
ccat---gtagctccctcttgtcttgctcaaggtgcttttctgtcaatttcttaatggcagcaagaccaacagagttcaatttcacttcagcaatatgag |
51499690 |
T |
|
| Q |
291 |
tcaacacatttacctaaagagccaa |
315 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
51499689 |
tcaacacatttacctaaaaagccaa |
51499665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 30204239 - 30204408
Alignment:
| Q |
58 |
atcaaccaccttcgcatcacataatccactttcattttccatgactcgaacactattttggtcatctgaagcagtcatgggagaagacagattatcaaac |
157 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||| || | |||||| | |||| |||||| |||||| | | |
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|
| T |
30204239 |
atcaaccaccttttcatcacataatccacttccattttccacaaatcgaacactattttgctcgtacgaagcatttatggaagaagatgtattatcgagc |
30204338 |
T |
|
| Q |
158 |
ccgtcaacattggtctctccatcctgattatcaccaattagtagctccctcttgtcttgctcaaggtgctttt |
230 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
30204339 |
atgtcaatgctgggctctccatcccgattatcaccaattag---ctccctcttgtcttgctcaaggtgatttt |
30204408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 51458410 - 51458303
Alignment:
| Q |
198 |
gtagctccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccactttagcaatatgagtcaacac |
297 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||||||||| || |||| ||||| || |||||||||||||| |||||||||||||| |
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| T |
51458410 |
gtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacac |
51458311 |
T |
|
| Q |
298 |
atttacct |
305 |
Q |
| |
|
|||||||| |
|
|
| T |
51458310 |
atttacct |
51458303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 36549885 - 36549805
Alignment:
| Q |
163 |
aacattggtctctccatcctgattatcaccaattagtagctccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaat |
246 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
36549885 |
aacagtggtctctccatcctgattatcaccat---gtagcaccctcttatcttgctcaaggtgcttttgtatcaatttcttaat |
36549805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 323
Target Start/End: Complemental strand, 4300199 - 4299925
Alignment:
| Q |
52 |
aactgaatcaaccaccttcgcatcacataatccactttcattttccatgactcgaacactattttggtcatctgaagcagtcatgggagaagacagatta |
151 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||| ||||||||| |||| |||| |||||||| || ||| ||| | | || | |||||| |||| |
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|
| T |
4300199 |
aactggatcaaccactttagcatcacataatccacttccattttccacgacttgaacgctattttgctcgtctaaaggatttatcgaagaagatgaatta |
4300100 |
T |
|
| Q |
152 |
tcaaacccgtcaacattggtctctccatcctgattatcaccaattagtagctccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcag |
251 |
Q |
| |
|
|||| | || ||| ||||| | ||| | |||||||| |||| | ||||||||||||||||| ||||||||| ||| ||| ||||||||| |||| |
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|
| T |
4300099 |
tcaagcatgttaacgctggtcccagcataccgattatca-caat--gccactccctcttgtcttgcttaaggtgcttctgtttcagtttcttaatggcag |
4300003 |
T |
|
| Q |
252 |
taatactc----tcagtttccagttccactttagcaatat--gagtcaacacatttacctaaagagccaaattgtaaa |
323 |
Q |
| |
|
||| | | | |||||||| || |||| |||||||| ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
4300002 |
caatgcccttaattagtttccaattttacttcagcaatatgagagtcaacacatttacctaaaaagccaaattataaa |
4299925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 6558 - 6665
Alignment:
| Q |
198 |
gtagctccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccactttagcaatatgagtcaacac |
297 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| | ||||||||| ||| ||||||| | |||| ||| || ||||| ||||| |||||||||||| |
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|
| T |
6558 |
gtagttccctcttgtcttgctcaaggttctttggcatcaatttctcaatggcagtaacatcctcataacccaatttcacttcagcaacatgagtcaacac |
6657 |
T |
|
| Q |
298 |
atttacct |
305 |
Q |
| |
|
||||||| |
|
|
| T |
6658 |
gtttacct |
6665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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