View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_36 (Length: 379)
Name: NF1362_low_36
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_36 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 160 - 367
Target Start/End: Original strand, 1586 - 1790
Alignment:
| Q |
160 |
aatgcttgtgttcatataagactatctcctacgaaagggattcaatgtctctaactccaaccatcttagaggaataacccatataatgaagtgagtgttt |
259 |
Q |
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| T |
1586 |
aatgcttgtgtccatataagactatctcctacgaaagggattcaatgtctctaactccaaccaccttagaggaataacccatataataaaataagtgttt |
1685 |
T |
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| Q |
260 |
gagaaagtgttgttagcactactcttctttataatgatgaccattttgtctattcatctcaagttttccacttgataaggaaaatcaattgccaaaactc |
359 |
Q |
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| T |
1686 |
gagaaagtgttgctagcaatactcttctttata---atgaccattttgtctattcatctcaagttttccacttgataaggaaaatcaattgccaaaactc |
1782 |
T |
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| Q |
360 |
attagaat |
367 |
Q |
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|||||||| |
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| T |
1783 |
attagaat |
1790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 9953712 - 9953675
Alignment:
| Q |
248 |
aagtgagtgtttgagaaagtgttgttagcactactctt |
285 |
Q |
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| T |
9953712 |
aagtgagtgtttgagatagtgttgttagcactactctt |
9953675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 42746437 - 42746498
Alignment:
| Q |
290 |
ataatgatgaccattttgtctattcatctcaagttttccacttgataaggaaaatcaattgc |
351 |
Q |
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| T |
42746437 |
ataatgatgacccttttgtttattcatcacaagtttgacacttgacaagaaaaatcaattgc |
42746498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 24106696 - 24106654
Alignment:
| Q |
242 |
ataatgaagtgagtgtttgagaaagtgttgttagcactactct |
284 |
Q |
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| T |
24106696 |
ataatgaagtgggtgtttgagagagtgttgctagcactactct |
24106654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 46395451 - 46395487
Alignment:
| Q |
248 |
aagtgagtgtttgagaaagtgttgttagcactactct |
284 |
Q |
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| T |
46395451 |
aagtgagtgtttgagagagtgttgctagcactactct |
46395487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 37078091 - 37078129
Alignment:
| Q |
242 |
ataatgaagtgagtgtttgagaaagtgttgttagcacta |
280 |
Q |
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| T |
37078091 |
ataatgaagtgagtgtttgagagagtgttgctagcacta |
37078129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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