View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_38 (Length: 376)
Name: NF1362_low_38
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 34 - 362
Target Start/End: Complemental strand, 52609384 - 52609062
Alignment:
| Q |
34 |
gggctaaggtaaaatgaggtgcggaaatgcagtcgtggatctcttatatatgtaaagagccgtgaaacactaaataaggctctcagaggcaatagtgtgc |
133 |
Q |
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| T |
52609384 |
gggctagggtaaaatgaggcgcgaaaatgcagtcgtggatctcttatatatgtaaagagccgtgaaacactaaataaggctctcagaggcaatagtgtgc |
52609285 |
T |
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| Q |
134 |
agccgtctaaaagcccgtactaatgcaacgaacgaactgaaaattaatctaaaaatagaataaaccactgcaaaatcatgtgcacattctcatttcgaga |
233 |
Q |
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| T |
52609284 |
agccgtctaaaagcacgtactaatgcaacgaacgaactgaa----aatctaaaaatagaataatccactgcaaaatcatgtgcacattctcatttcgaga |
52609189 |
T |
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| Q |
234 |
aaagccttaaaataccttgagatatcattgactttgagtattggaatgtctttgttggtacatcccccacacccatgaagaaccgctgtcgtcaacaacc |
333 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52609188 |
aaagccttaaaacaccttgagatatcattgactttgagtattggaatgtctttgttggtacat--cccacacccatgaagaaccgctgtcgtcaacaacc |
52609091 |
T |
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| Q |
334 |
acatcaacttcctagcatccacttcggcc |
362 |
Q |
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| T |
52609090 |
acatcaacttcctagcacccacttcggcc |
52609062 |
T |
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