View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_low_4 (Length: 703)

Name: NF1362_low_4
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_low_4
NF1362_low_4
[»] chr2 (8 HSPs)
chr2 (6-233)||(34147549-34147776)
chr2 (6-233)||(2276965-2277192)
chr2 (522-653)||(2276522-2276653)
chr2 (522-653)||(34148104-34148235)
chr2 (272-357)||(34147815-34147900)
chr2 (272-319)||(2276879-2276926)
chr2 (319-357)||(2276857-2276895)
chr2 (354-391)||(2276764-2276801)
[»] chr5 (3 HSPs)
chr5 (6-233)||(32758236-32758463)
chr5 (522-653)||(32758792-32758923)
chr5 (272-357)||(32758502-32758587)
[»] scaffold0011 (2 HSPs)
scaffold0011 (109-169)||(128036-128096)
scaffold0011 (182-227)||(128122-128167)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 5e-92; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 34147549 - 34147776
Alignment:
Q  6 ctccaacaatatcaactcaaacctaaagtcattcattcaaccatagtcatattcctcatctcaattctttcatatttcttcttcagagaatcccacctaa 105  Q
    ||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34147549 ctccatcattatcaactcaaacctaaagccattcattcaaccataatcatattcctcatctcaattctttcctatttcttcttcagagaatcccacctaa 34147648  T
Q  106 aaacattcattccaccatagtcacatcttctctcaattttatattcgaatccaaacaacaaagcnnnnnnnnttcgaattccagattcgaaacattcaat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||||| ||||||||    
T  34147649 aaacattcattccaccatagtcacatcttctctcaattttatattcgaatccaaacaacaaagcaaaaaaaattcgaattctagattcgaatcattcaat 34147748  T
Q  206 tctttcatctttcctattcagcaatcaa 233  Q
    ||||||||||||||| ||||||||||||    
T  34147749 tctttcatctttcctcttcagcaatcaa 34147776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 2277192 - 2276965
Alignment:
Q  6 ctccaacaatatcaactcaaacctaaagtcattcattcaaccatagtcatattcctcatctcaattctttcatatttcttcttcagagaatcccacctaa 105  Q
    ||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2277192 ctccatcattatcaactcaaacctaaagtcattcattcaaccataatcatattcctcatctcaattctttcctatttcttcttcagagaatcccacctaa 2277093  T
Q  106 aaacattcattccaccatagtcacatcttctctcaattttatattcgaatccaaacaacaaagcnnnnnnnnttcgaattccagattcgaaacattcaat 205  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||        ||||||||| ||||||||| ||||||||    
T  2277092 aaacattcattccaccatagtcacatcttttctcaactttatattcgaatccaaacaacaaagcaaaaaaaattcgaattctagattcgaatcattcaat 2276993  T
Q  206 tctttcatctttcctattcagcaatcaa 233  Q
    ||||||||||||||| ||||||||||||    
T  2276992 tctttcatctttcctcttcagcaatcaa 2276965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 522 - 653
Target Start/End: Complemental strand, 2276653 - 2276522
Alignment:
Q  522 agctttacggttggtgaattgatgttgttgttctatatgaattgatgttgctttacggttgttgttgttctatgaattgaatttgttaatggtgttccat 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2276653 agctttacggttggtgaattgatgttgttgttctatatgaattgatgttgctttacggttgttgttgttctatgaattgaatttgttaatggtgttccat 2276554  T
Q  622 gttgttgctgttctggatttgttgtttttctg 653  Q
    | ||||||| |||||||||||||||| |||||    
T  2276553 gatgttgctattctggatttgttgttgttctg 2276522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 522 - 653
Target Start/End: Original strand, 34148104 - 34148235
Alignment:
Q  522 agctttacggttggtgaattgatgttgttgttctatatgaattgatgttgctttacggttgttgttgttctatgaattgaatttgttaatggtgttccat 621  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  34148104 agctttaccgttggtgaattgatgatgttgttctatatgaattgatgttgctttacggttgttgttgttctatgaattgaatgtgttaatagtgttccat 34148203  T
Q  622 gttgttgctgttctggatttgttgtttttctg 653  Q
    | |||||||||||| ||||||||||| |||||    
T  34148204 gatgttgctgttctagatttgttgttgttctg 34148235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 34147815 - 34147900
Alignment:
Q  272 ccttcagatctgagttggttatgtgcctacgcttcctctcttgaaaccttcttctcttgaaacccttttatgggttctagatgtga 357  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  34147815 ccttcagatcttagttggttatgtgcctacgcttcctctcttgaaaccctcttctcttgaaacccttttctgggttctagatgtga 34147900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 2276926 - 2276879
Alignment:
Q  272 ccttcagatctgagttggttatgtgcctacgcttcctctcttgaaacc 319  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  2276926 ccttcatatctgagttggttatgtgcctacgcttcctctcttgaaacc 2276879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 2276895 - 2276857
Alignment:
Q  319 cttcttctcttgaaacccttttatgggttctagatgtga 357  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  2276895 cttcctctcttgaaacccttttctgggttctagatgtga 2276857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 2276801 - 2276764
Alignment:
Q  354 gtgaaagaaatccagagatgttgttgctgtaattcgaa 391  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  2276801 gtgaaagagatccagagatgttgttgttgtaattcgaa 2276764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 1e-89; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 32758236 - 32758463
Alignment:
Q  6 ctccaacaatatcaactcaaacctaaagtcattcattcaaccatagtcatattcctcatctcaattctttcatatttcttcttcagagaatcccacctaa 105  Q
    ||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32758236 ctccatcattatcaactcaaacctaaagccattcattcaaccataatcatattcctcatctcaattctttcctatttcttcttcagagaatcccacctaa 32758335  T
Q  106 aaacattcattccaccatagtcacatcttctctcaattttatattcgaatccaaacaacaaagcnnnnnnnnttcgaattccagattcgaaacattcaat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||||| | ||||||    
T  32758336 aaacattcattccaccatagtcacatcttctctcaattttatattcgaatccaaacaacaaagcaaaaaaaattcgaattctagattcgaatcgttcaat 32758435  T
Q  206 tctttcatctttcctattcagcaatcaa 233  Q
    ||||||||||||||| ||||||||||||    
T  32758436 tctttcatctttcctcttcagcaatcaa 32758463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 522 - 653
Target Start/End: Original strand, 32758792 - 32758923
Alignment:
Q  522 agctttacggttggtgaattgatgttgttgttctatatgaattgatgttgctttacggttgttgttgttctatgaattgaatttgttaatggtgttccat 621  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  32758792 agctttaccgttggtgaattgatgatgttgttctatatgaattgatgttgctttacggttgttgttgttctatgaattgaatgtgttaatagtgttccat 32758891  T
Q  622 gttgttgctgttctggatttgttgtttttctg 653  Q
    | |||||||||||| ||||||||||| |||||    
T  32758892 gatgttgctgttctagatttgttgttgttctg 32758923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 32758502 - 32758587
Alignment:
Q  272 ccttcagatctgagttggttatgtgcctacgcttcctctcttgaaaccttcttctcttgaaacccttttatgggttctagatgtga 357  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  32758502 ccttcagatcttagttggttatgtgcctacgcttcctctcttgaaaccctcttctcttgaaacccttttctgggttctagatgtga 32758587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 128036 - 128096
Alignment:
Q  109 cattcattccaccatagtcacatcttctctcaattttatattcgaatccaaacaacaaagc 169  Q
    |||||||||||||||| ||| || |||||||||||| |||||||||||| |||| ||||||    
T  128036 cattcattccaccataatcatatattctctcaatttcatattcgaatcccaacagcaaagc 128096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 128122 - 128167
Alignment:
Q  182 aattccagattcgaaacattcaattctttcatctttcctattcagc 227  Q
    ||||||||||| ||| ||||||||||||||||||||| | ||||||    
T  128122 aattccagatttgaatcattcaattctttcatctttcttcttcagc 128167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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