View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_41 (Length: 361)
Name: NF1362_low_41
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 352
Target Start/End: Complemental strand, 49252447 - 49252125
Alignment:
| Q |
30 |
aataacccaattcatagcatgtaagagacccttagcctttccttcttgaacctctaaaagaggtgtaacttggatagttttggcttggacaaaatggcca |
129 |
Q |
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| T |
49252447 |
aataacccaattcatagcatgtaagagacccttagcctttccttcttgaacctgtaaaagaggtgtaacttggatagttttggcttggacaaaatggcca |
49252348 |
T |
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| Q |
130 |
cgatcatcacgaattaaaatgccaattcccaccatgttgtgagtgtgacaaaaagaggcatcaatattgcatttcataaaattggctctgggtttgatcc |
229 |
Q |
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| T |
49252347 |
cgatcatcacgaattaaaatgccaattcccaccatgttgtgagtgtgacaaaaagaggcatcaatattgcatttcataaaattggctctgggtttgatcc |
49252248 |
T |
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| Q |
230 |
aagcatctttcatgattgttttacatgaataatcaacctaatagtattaactataatttatagaataatttaatacatttagtattattttgcatcgata |
329 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49252247 |
aagcatctttcatgattgttctacattaataatcaacctaatagtattaactataatttatagaataatttaatacatttagtattattttgcatcgata |
49252148 |
T |
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| Q |
330 |
cattcaatgtttaaaagtattat |
352 |
Q |
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|||||| |||||||||||||||| |
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| T |
49252147 |
cattcagtgtttaaaagtattat |
49252125 |
T |
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