View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1362_low_5 (Length: 685)
Name: NF1362_low_5
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_5 |
 | |
|
| [»] scaffold1439 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 43)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 1 - 672
Target Start/End: Complemental strand, 22458819 - 22458148
Alignment:
| Q |
1 |
catgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458819 |
catgtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatgctgcacaagttttacgaacaacaaggagcaaatctcccccaaa |
22458720 |
T |
|
| Q |
101 |
gtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
22458719 |
gtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttaca |
22458620 |
T |
|
| Q |
201 |
tttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
22458619 |
tttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgttgcaaatgcatgtaagaaa |
22458520 |
T |
|
| Q |
301 |
tcttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtc |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458519 |
tcttcttttgttgaagtgtatgaaatgaaaggtttggctgaacaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtc |
22458420 |
T |
|
| Q |
401 |
cagaaaatcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatag |
500 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458419 |
cagaaaatcttattgatatatcttttaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatag |
22458320 |
T |
|
| Q |
501 |
aaatacatcagaatggtacaagtttagtgaaattctaaatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttg |
600 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
22458319 |
aaatacatcagaatggtataagtttagtgaaaatctaaatatagagttaaaagaagatttgaagataaaaaaaattgtaggtctcggttaccatgatctg |
22458220 |
T |
|
| Q |
601 |
tcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatata |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458219 |
tcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatata |
22458148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 1 - 672
Target Start/End: Complemental strand, 22481800 - 22481129
Alignment:
| Q |
1 |
catgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481800 |
catgtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatgctgcacaagttttacgaacaacaaggagcaaatctcccccaaa |
22481701 |
T |
|
| Q |
101 |
gtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
22481700 |
gtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttaca |
22481601 |
T |
|
| Q |
201 |
tttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
22481600 |
tttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgttgcaaatgcatgtaagaaa |
22481501 |
T |
|
| Q |
301 |
tcttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtc |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481500 |
tcttcttttgttgaagtgtatgaaatgaaaggtttggctgaacaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtc |
22481401 |
T |
|
| Q |
401 |
cagaaaatcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatag |
500 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481400 |
cagaaaatcttattgatatatcttttaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatag |
22481301 |
T |
|
| Q |
501 |
aaatacatcagaatggtacaagtttagtgaaattctaaatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttg |
600 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
22481300 |
aaatacatcagaatggtataagtttagtgaaaatctaaatatagagttaaaagaagatttgaagataaaaaaaattgtaggtctcggttaccatgatctg |
22481201 |
T |
|
| Q |
601 |
tcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatata |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481200 |
tcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatata |
22481129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 108 - 649
Target Start/End: Complemental strand, 22358225 - 22357684
Alignment:
| Q |
108 |
tcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgg |
207 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||| |||||| | | |||||||| | |
|
|
| T |
22358225 |
tcaaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgtatgggagtcacattttttg |
22358126 |
T |
|
| Q |
208 |
gatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatcttctt |
307 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| || |||||||||||| |||||||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
22358125 |
catgatattgaatttgctatgattgataacaaaaagggttctaggatattaatcactacaagaaacatggatgttgcgaatacttgtaagaaatcttctt |
22358026 |
T |
|
| Q |
308 |
ttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaa |
407 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
22358025 |
ttgttgaagtgtatgaactaaaaggtttgactgtagaacaatcttttgagttgttcaataagaaggcattccatgacttaaatggacgttgtccagaaaa |
22357926 |
T |
|
| Q |
408 |
tcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaataca |
507 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||| || |||||||| || | || |
|
|
| T |
22357925 |
tcttattgatatatcttccaaaattgttaaaaaatgcaaaggattaccactagcaattgtagtcattggtggtattttagctcccaaagataaaattcca |
22357826 |
T |
|
| Q |
508 |
tcagaatggtacaagtttagtgaaattctaaatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttaca |
607 |
Q |
| |
|
|||||||| ||||||||||||| | ||||| ||||||| | ||| ||| | || || |||| | |||||||||||||| ||||| |
|
|
| T |
22357825 |
atggaatggtataagtttagtgaaaatataaatgcagagttagaggaatattccataataagaaaaattttaggatttagttaccatgatttgccttact |
22357726 |
T |
|
| Q |
608 |
atctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22357725 |
acctcaagtcatgtttcttgtattttggattatatcctgaag |
22357684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 649
Target Start/End: Complemental strand, 22443065 - 22442424
Alignment:
| Q |
5 |
tatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtat |
104 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||| | || |||||||||| ||| | |||||||| |||||||| | | || || || ||| | |
|
|
| T |
22443065 |
tatggatcatggtgtctcaatcattcaatattgaaaaagtgttgagggacattatgctcgagttttacaaacaacaaaggaaagttcctcctcagagtct |
22442966 |
T |
|
| Q |
105 |
tcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttt |
204 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||| |||||| | | ||||||| |
|
|
| T |
22442965 |
ccatcaaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgtatgggagtcacatttt |
22442866 |
T |
|
| Q |
205 |
tgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatctt |
304 |
Q |
| |
|
| | ||||||| ||||||||||||||||||| |||||||||| || |||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
22442865 |
ttgcatgatattgaatttgctatgattgataacaaaaagggttctaggatattaatcactacaagaaacatggatgttgcaaatacttgtaagaaatctt |
22442766 |
T |
|
| Q |
305 |
cttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccaga |
404 |
Q |
| |
|
|||||||| || ||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| | |
|
|
| T |
22442765 |
cttttgtt------tacgaactaaaaggtttgactgtagaacaatctttggagttgttcaataagaaggcatttcatgacttaaacggacgttgtccaaa |
22442672 |
T |
|
| Q |
405 |
aaatcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaat |
504 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
22442671 |
aaatcttattggtatatcttccaaaattgttgaaaaatgcaatggattaccactagcaattgtagtcattggtggtattttagctcccaaagatagaaat |
22442572 |
T |
|
| Q |
505 |
acatcagaatggtacaagtttagtgaaattctaaatatag---agttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgt |
601 |
Q |
| |
|
||| |||||||| |||||| ||||| | ||||| || |||| || ||| ||| | | || |||| ||| |||||||||||||| |
|
|
| T |
22442571 |
acaattgaatggtatgagtttaatgaaaatataaatgcagatcagtttaaggaatattccatagtaagaaaaattttaggactcagttaccatgatttgc |
22442472 |
T |
|
| Q |
602 |
cttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
||| ||| |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
22442471 |
cttgcaacctcaagtcatgtttcttgtattttggattatatcccgaag |
22442424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 97 - 649
Target Start/End: Complemental strand, 22368161 - 22367606
Alignment:
| Q |
97 |
caaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaact |
196 |
Q |
| |
|
|||||| ||||||||||| || || ||| ||| |||||||||||||| ||||||||||| | ||||||||| ||| |||| |||||||| |||||| ||| |
|
|
| T |
22368161 |
caaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtacgttgtagtgtttgatgatgtatgggact |
22368062 |
T |
|
| Q |
197 |
tacatttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaa |
296 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
22368061 |
cacatttttggaatgatattgaattttctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaacgaggatgttgcagatgcttgtaa |
22367962 |
T |
|
| Q |
297 |
gaaatcttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgt |
396 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||||| ||||||| ||||||| || ||||||||||||||| | ||||| ||||| | |||| | |
|
|
| T |
22367961 |
gaaatcttcttttgttgaagtgcataaacttgaaggtttaagtgaagaaaaatctttagaattgttcaataagaaggcgttccatgacttgagcggatat |
22367862 |
T |
|
| Q |
397 |
tgtccagaaaatcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaag |
496 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
22367861 |
tgtccagaaaatcttattgatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaag |
22367762 |
T |
|
| Q |
497 |
atagaaatacatcagaatggtacaagtttagtgaaattctaaatatag---agttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttacca |
593 |
Q |
| |
|
|||| ||| || ||||||| ||||||||||||| | ||||| || ||| ||| ||| ||| | ||| || |||| || ||||||| |
|
|
| T |
22367761 |
ataggaatccaattgaatggtctaagtttagtgaaaatataaatgcagatcagtcaaaggaatattccatgataaaaaaaattctaggacttagttacca |
22367662 |
T |
|
| Q |
594 |
tgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
||||||| ||| ||| |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
22367661 |
tgatttgccttgcaacctcaagtcatgtttcttgtactttggattatatcctgaag |
22367606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 131 - 532
Target Start/End: Complemental strand, 22431373 - 22430972
Alignment:
| Q |
131 |
ttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgggatgatatcaaatttgctatgat |
230 |
Q |
| |
|
||||| || |||| ||||||||||| | ||||||||| ||| |||| |||||||| |||||| | | | |||||||| ||||||| ||||||||||||| |
|
|
| T |
22431373 |
ttgataaactgagaaactacttgcaaggaaaaaggtacgttgtagtgtttgatgatgtatgggagtcaaatttttggtatgatattgaatttgctatgat |
22431274 |
T |
|
| Q |
231 |
tgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatcttcttttgttgaagtgtatgaactgaaa |
330 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
22431273 |
tgataacaaaaatggttgtaagatattaatcacaacaagaaacaaggatggtgtagatgcttgtaagaaatcttcttttgttgaagtgcatgaacttaaa |
22431174 |
T |
|
| Q |
331 |
ggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttcaaaaa |
430 |
Q |
| |
|
||||| | |||||| ||||||| || |||||||||||||| ||||| ||||| | |||| |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
22431173 |
ggtttaaccgaagaaaaatctttagaattgttcaataagaaagtgttccatgacttgagcggatattgtccagaaaatcttatagatatatcttccaaaa |
22431074 |
T |
|
| Q |
431 |
ttgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtacaagtttagtga |
530 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||| ||| || ||||||| ||||||||||| |
|
|
| T |
22431073 |
ttgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagataggaatccaattgaatggtctaagtttagtga |
22430974 |
T |
|
| Q |
531 |
aa |
532 |
Q |
| |
|
|| |
|
|
| T |
22430973 |
aa |
22430972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 22436964 - 22436433
Alignment:
| Q |
1 |
catgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||| |||| |||||||||| |||| | || ||||| |||||||||| | ||| || || | |
|
|
| T |
22436964 |
catgtatggatcacagtgtctcaatcatacagtaaagaaaaattgttgagggacattttgctcgagatttacaaacaacaagggaaagatcctcctcaga |
22436865 |
T |
|
| Q |
101 |
gtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttaca |
200 |
Q |
| |
|
|||| || ||||||| ||||| | ||| |||||||||||| || | |||||| |||||||||| || | || ||||| || |||||||||||| | |
|
|
| T |
22436864 |
gtatatatgaaatgaacggagagccgttgattgatgaagtgataaaacagttgcagcaaaaaaggtactttgtcgtgtttgacgatgtatggaacttaaa |
22436765 |
T |
|
| Q |
201 |
tttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaa |
300 |
Q |
| |
|
| ||||| ||||||| ||||||||||||||||||| ||| |||| |||| |||||||||||||||| || ||| ||||| ||||| ||| ||||| | |
|
|
| T |
22436764 |
tatttggaatgatattgaatttgctatgattgataacttaaatggttctaaggtattaatcacaacaaggaaaatgaatgttgcaaattcttttaagaga |
22436665 |
T |
|
| Q |
301 |
tcttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtc |
400 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| |||||||| ||||||| || ||||||||||||||| ||||||| |||| | ||| |||||| |
|
|
| T |
22436664 |
tcttcttttgttgaagtacatgaacttcaaggtttaactgaagaaaaatctttagaattgttcaataagaaggcattccataacttgagtggatgttgtc |
22436565 |
T |
|
| Q |
401 |
cagaaaatcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatag |
500 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||| |||||||||| ||||| || |||||||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
22436564 |
cacaaaatcttattgatatatcttccaaaattgttaaaaaatgcaaaggattacctctagcaattgtagtcactggtggtcttttatcttgcaaagatag |
22436465 |
T |
|
| Q |
501 |
aaatacatcagaatggtacaagtttagtgaaa |
532 |
Q |
| |
|
|||| | | |||||||||||||||||||||| |
|
|
| T |
22436464 |
aaatcctactgaatggtacaagtttagtgaaa |
22436433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 22468278 - 22467633
Alignment:
| Q |
1 |
catgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaa |
100 |
Q |
| |
|
||||||||||||| ||||||| | |||||||||||||| |||| ||||||| || |||| | | ||||| |||||||||| | | ||| || || | |
|
|
| T |
22468278 |
catgtatggatcacggtgtctcgaccatacaatatagaaaaattgttgagggaaattttgctcgatatttacaaacaacaaggggaagatcctcctcaga |
22468179 |
T |
|
| Q |
101 |
gtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttaca |
200 |
Q |
| |
|
|| | ||||| ||| ||||| || |||| |||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |||||| | | ||| |
|
|
| T |
22468178 |
gtctccatcagatggatcgaaagccattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttatagtgtttgatgatgtatgggattcaca |
22468079 |
T |
|
| Q |
201 |
tttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaa |
300 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| || |||| || |||||||||||||| |
|
|
| T |
22468078 |
tttttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacgagaaacaaggttgttgcagatgcttgtaagaaa |
22467979 |
T |
|
| Q |
301 |
tcttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtc |
400 |
Q |
| |
|
||||||| | ||||| |||| ||| || |||| |||||||||| || ||||| ||||| || |||||| | ||||| ||||| ||||| ||||| |
|
|
| T |
22467978 |
---tcttttggtaaagtgcatgagctggaacgtttatctgaagaacagtccttggaattgtttaaaaagaaggcgttccatgacttggacggagtttgtc |
22467882 |
T |
|
| Q |
401 |
cagaaaatcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatag |
500 |
Q |
| |
|
||||||||||| |||| |||||||| |||||||||||||| ||||| ||||| || ||||||||||| ||| |||| |||||||||| ||||| |||| |
|
|
| T |
22467881 |
cagaaaatctttttgacatatcttccaaaattgttgaaaactgcaaaggattacctctagcaattgttgtcaccggtgatattttatctcgcaaaaatag |
22467782 |
T |
|
| Q |
501 |
aaatacatcagaatggtacaagtttagtgaaattctaaatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttg |
600 |
Q |
| |
|
|||| || ||||||| || |||||||||| | ||||| |||||||| | | | ||| | || || |||| | |||||||| |||| |
|
|
| T |
22467781 |
aaatccaattgaatggtctaaatttagtgaaaatataaatgtagagttagagggatattccacaataagaaaaattttaggatttagttaccataattta |
22467682 |
T |
|
| Q |
601 |
tcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22467681 |
ccttacaacctcaagtcatgtttcttgtattttggattatatcctgaag |
22467633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 22630769 - 22630123
Alignment:
| Q |
1 |
catgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaa |
100 |
Q |
| |
|
|||| |||||||| ||||||| | |||||||||||||| |||| |||||||||| |||| | || ||||| |||||||||| | ||| || |||| |
|
|
| T |
22630769 |
catgaatggatcacggtgtctcgaccatacaatatagaaacattgttgagggacattttgctcgagatttacaaacaacaagggaaagatcctcctcaaa |
22630670 |
T |
|
| Q |
101 |
gtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgtta-tagtttttgatgacgtatggaacttac |
199 |
Q |
| |
|
|| | ||||||||| ||||| || |||| |||||||||||||| ||||||||||| | ||||||||| ||| |||| |||||||| |||||| | || |
|
|
| T |
22630669 |
gtctccatcaaatggatcgaaagccattagttgatgaagtgagaaactacttgcaaggaaaaaggtacgtttgtagtgtttgatgatgtatgggaggcac |
22630570 |
T |
|
| Q |
200 |
atttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaa |
299 |
Q |
| |
|
| |||||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| |
|
|
| T |
22630569 |
aattttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaacaaggatgttgcagatgcttgtaagaa |
22630470 |
T |
|
| Q |
300 |
atcttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgt |
399 |
Q |
| |
|
||||| ||| ||||| |||| ||| || |||| |||||||||| |||||||| ||||| || ||||| | ||||| ||||| | ||| |||| |
|
|
| T |
22630469 |
atctt---ttggcaaagtgcatgagctggaacgtttatctgaagaacagtctttggaattgtttaaaaagaaagcgttccatgacttggatggattttgt |
22630373 |
T |
|
| Q |
400 |
ccagaaaatcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagata |
499 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||||||||||||||| ||||| || |||||||||||| ||| |||| |||||||||| |||||| || |
|
|
| T |
22630372 |
ccagaaaatctttttgacatatcttccaaaattgttgaaaaatgcaaaggattacctctagcaattgtagtcaccggtgatattttatctcgcaaagtta |
22630273 |
T |
|
| Q |
500 |
gaaatacatcagaatggtacaagtttagtgaaattctaaatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgattt |
599 |
Q |
| |
|
||||| || ||||||| ||||||||||||| | ||||| |||||||| | ||| ||| | || | |||| | ||||||||||||| |
|
|
| T |
22630272 |
gaaatccaattgaatggtctaagtttagtgaaaatataaatgtagagttagaggaatattccacaataagaaaaaatttaggatttagttaccatgattt |
22630173 |
T |
|
| Q |
600 |
gtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
22630172 |
accttacaacctcaagtcatgtttcttgtattttggattctatcctgaag |
22630123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 106 - 649
Target Start/End: Complemental strand, 22635728 - 22635188
Alignment:
| Q |
106 |
catcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacattttt |
205 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||| ||| |||| || | ||||||||||||| |||| |||||||| |||||| | | |||||||| |
|
|
| T |
22635728 |
catcaaatggatcgaaagtcattagttgatgaagtgagaaaccactttcaaggaaaaaggtatgttttagtgtttgatgatgtatgggagtcacattttt |
22635629 |
T |
|
| Q |
206 |
gggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatcttc |
305 |
Q |
| |
|
|| |||||| ||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| | ||||||| ||||||||||||| ||| || |
|
|
| T |
22635628 |
ggtctgatattgaatttgctatgattgataacaaaaatagttgtaggatattaatcacaacaagaaaaaaggatgttgcaaatgcttgtaataaa---tc |
22635532 |
T |
|
| Q |
306 |
ttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaa |
405 |
Q |
| |
|
||||| | ||||| || | ||| || |||| ||||| ||||||||||||| ||||| |||||| | |||| | ||| |||| || ||| ||| |
|
|
| T |
22635531 |
ttttggtaaagtgcataatctggaacgtttatctgaaaaacaatctttggaattgtttctaaagaaggcgctccatggcttggacggcatttttcctgaa |
22635432 |
T |
|
| Q |
406 |
aatcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaata |
505 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||| ||||||||| |||| ||||| ||| ||||||||| |
|
|
| T |
22635431 |
tatcttattgatatatcttccaaaattgtcgaaaaatgcaaaggattacctctagcaattgtagtcattggtgatattctatctcgcacggatagaaatt |
22635332 |
T |
|
| Q |
506 |
catcagaatggtacaagtttagtgaaattctaaatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtctta |
605 |
Q |
| |
|
|| |||||||| ||||||||||||| | ||||| ||||||| | ||| ||| | ||| || |||| || |||||||||||||| | | |
|
|
| T |
22635331 |
caatagaatggtcgaagtttagtgaaaatataaatgcagagttagaggaatattccatgataagaaaaattttaggacttagttaccatgatttgccatg |
22635232 |
T |
|
| Q |
606 |
caatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
| | |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22635231 |
ctacctcaagtcatgtttcttgtattttggattatatcctgaag |
22635188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 106 - 549
Target Start/End: Complemental strand, 22354036 - 22353595
Alignment:
| Q |
106 |
catcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacattttt |
205 |
Q |
| |
|
||||||||| ||||| || |||| |||||||||||||| ||| ||||||| | ||||||||| ||| |||| |||||| | |||| | | | |||||||| |
|
|
| T |
22354036 |
catcaaatggatcgaaagccattagttgatgaagtgagaaacaacttgcaaggaaaaaggtacgttgtagtgtttgataatgtataggagtcacattttt |
22353937 |
T |
|
| Q |
206 |
gggatgatatca-aatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatctt |
304 |
Q |
| |
|
|| | ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| || ||| |||||||||||||| |
|
|
| T |
22353936 |
ggcaagatatttgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaacaaggatgttacagatgattgtaagaaatctt |
22353837 |
T |
|
| Q |
305 |
cttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccaga |
404 |
Q |
| |
|
| | | ||||| |||| ||| || |||| ||||| ||||||||||||| ||||| || |||||| | |||| ||||| ||||| ||||||| | |
|
|
| T |
22353836 |
---tcggtaaagtgcatgagctggaacgtttatctgaaaaacaatctttggatttgtttaaaaagaaggcgttccgtgacttggacggattttgtccaaa |
22353740 |
T |
|
| Q |
405 |
aaatcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaat |
504 |
Q |
| |
|
||||||| || |||||||||| ||||| ||||||||||||| ||||| || || ||||||||| |||| ||| |||||||||| |||||||||||||| |
|
|
| T |
22353739 |
aaatcttttttatatatcttccgaaattattgaaaaatgcaaaggattacctctcgcaattgtagtcataggtaatattttatctcgcaaagatagaaat |
22353640 |
T |
|
| Q |
505 |
acatcagaatggtacaagtttagtgaaattctaaatatagagtta |
549 |
Q |
| |
|
|| ||||||| ||||||||||||| | ||||| ||||||| |
|
|
| T |
22353639 |
ccaattgaatggtctaagtttagtgaaaatataaatgcagagtta |
22353595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 3 - 378
Target Start/End: Complemental strand, 30989633 - 30989258
Alignment:
| Q |
3 |
tgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaag- |
101 |
Q |
| |
|
||||||||||| ||||||||||||||| | | | ||||| ||| ||||||||||||||| ||||||||| ||||| | | || | ||| | || || | |
|
|
| T |
30989633 |
tgtatggatcatagtgtctcaatcatatactgttgaagggttgttgagggacatgttgctaaagttttacaaacaaaacgaagaagatc-ctcctaagga |
30989535 |
T |
|
| Q |
102 |
tattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacat |
201 |
Q |
| |
|
|||| ||||||| |||||| ||||||| |||||||||||| |||||||||| | |||||||||||| | || |||||||| || |||| ||||| |
|
|
| T |
30989534 |
tatttttcaaatggatcgagggtcattgactgatgaagtgagaaactacttgcggttaaaaaggtatgtcgttgtgtttgatgatgtttggagtgtacat |
30989435 |
T |
|
| Q |
202 |
ttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaat |
301 |
Q |
| |
|
|||||||||||||| |||||||| | |||||||||||||| || |||||||||| ||||||||||||||| | |||||| ||||||| |||| |
|
|
| T |
30989434 |
ttttgggatgatattgaatttgctgtaattgataataaaaatggaagtaagatatttatcacaacaagaaacctagatgttgtgttgtcttgtaaaaaat |
30989335 |
T |
|
| Q |
302 |
cttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattc |
378 |
Q |
| |
|
|||||| | |||||||| ||| || || ||| |||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30989334 |
cttcttatattgaagtgcttgagttgcaacctttaaatgaacaacaatctttggagttgttcaataagaaggcattc |
30989258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 3 - 377
Target Start/End: Original strand, 21945762 - 21946136
Alignment:
| Q |
3 |
tgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggag-caaatctcccccaaag |
101 |
Q |
| |
|
||||||||||| |||||||||||||| || | ||||||||| ||||||||||||||| || || || ||||| |||||| |||| ||||| | |
|
|
| T |
21945762 |
tgtatggatcactgtgtctcaatcatatgatgttgaaggattgttgagggacatgttgctaaaacttcacaaacaaaaaggagacaaacctcccgaggat |
21945861 |
T |
|
| Q |
102 |
tattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacat |
201 |
Q |
| |
|
||| ||||||||||||||||| |||| |||||||||| || ||||||||| |||| ||||||||| | || |||||||| || |||| ||||| |
|
|
| T |
21945862 |
acttc-tcaaatgaatcgagagttattgacaaatgaagtgagaaattacttgcagcaaaagaggtatgttgtcgtctttgatgatgtttggactgtacat |
21945960 |
T |
|
| Q |
202 |
ttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaat |
301 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||| |||||| || ||| |||||| || |||||||| |||| | ||||| ||| ||||||| |||| |
|
|
| T |
21945961 |
ttttgggatgattttaaatttgctgcaattgatagtaaaaatggaagtaggatatttataacaacaaggaacaagaatgttgtgaattcttgtaaaaaat |
21946060 |
T |
|
| Q |
302 |
cttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacatt |
377 |
Q |
| |
|
||||||| ||| ||| ||| ||| || |||| || |||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
21946061 |
cttctttcactgagatgtttgagctgcaatgtttaactcaagaacaatctttggagttgtttaataagaaggcatt |
21946136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 22115223 - 22115502
Alignment:
| Q |
3 |
tgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagt |
102 |
Q |
| |
|
||||||||||| ||||||||||||||| | | ||||| ||| ||||||| ||||||| || ||||| ||||| |||||| |||| || ||| |
|
|
| T |
22115223 |
tgtatggatcacagtgtctcaatcatatgaagttgaagggttgttgagggatatgttgccaaaaatttacaaacaagaaggagacaatccaccttcgagt |
22115322 |
T |
|
| Q |
103 |
attcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatt |
202 |
Q |
| |
|
||| |||||||| |||||| | ||| |||||||||||| || ||||||||| |||| ||||| ||| | || |||||||| || ||||| |||||| |
|
|
| T |
22115323 |
atttatcaaatggatcgaggattattaactgatgaagtgagaaaatacttgcagaaaaagaggtacgttgtcgtgtttgatgatgtttggaatgtacatt |
22115422 |
T |
|
| Q |
203 |
tttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtt |
282 |
Q |
| |
|
||||||||||||| ||||| || | ||||||| |||||| || |||||||||| || ||||||||||||||||||||| |
|
|
| T |
22115423 |
tttgggatgatattgaattttctgtaattgatagtaaaaatggaagtaagatatttataacaacaagaaacatggatgtt |
22115502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 4 - 378
Target Start/End: Original strand, 21930560 - 21930934
Alignment:
| Q |
4 |
gtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagta |
103 |
Q |
| |
|
|||||||||| ||||||||||||||| || | ||||| ||| ||||||||||||||| || ||||| ||||| ||||| |||| | || | |
|
|
| T |
21930560 |
gtatggatcacagtgtctcaatcatatgatgttgaagggttgttgagggacatgttgctaaaaatttacaaacaaataggagacaatcctactcagaact |
21930659 |
T |
|
| Q |
104 |
ttcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacattt |
203 |
Q |
| |
|
|| |||||||| |||||| |||||| || ||||||||| || | ||||||| |||| ||||||||| | || |||||||| || ||||| ||||||| |
|
|
| T |
21930660 |
tttatcaaatggatcgaggatcattgactgctgaagtgagaaaatgcttgcagaaaaagaggtatgttgtcgtgtttgatgatgtttggaatgtacattt |
21930759 |
T |
|
| Q |
204 |
ttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatct |
303 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||| || |||||||||| || |||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
21930760 |
ttgggatgatattgaatttgctgcaattgatagtaaaaatggaagtaagatatttataacaacaaggaacatggatgttgtggtgtcttgtaaaaaatct |
21930859 |
T |
|
| Q |
304 |
tcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattc |
378 |
Q |
| |
|
||||| ||||| || ||| || || ||| || | |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21930860 |
tctttcattgaaatgcttgagttgcaacctttaactcatgaacaatctttggagttgttcaataagaaggcattc |
21930934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 140 - 489
Target Start/End: Complemental strand, 22621105 - 22620753
Alignment:
| Q |
140 |
tgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgggatgatatcaaatttgctatgattgataataa |
239 |
Q |
| |
|
|||| ||| ||||||| |||| ||||||||| | || |||||||| ||||||| | || |||||||| |||| || | || | ||||||||||||| |
|
|
| T |
22621105 |
tgagaaaccacttgcaacaaaagaggtatgtttttgtatttgatgatgtatggaccatagatttttggaatgaaatagagcatgttgtgattgataataa |
22621006 |
T |
|
| Q |
240 |
aaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatcttcttttgttgaagtgtatgaactgaaaggtttggct |
339 |
Q |
| |
|
||| || |||||||||| || |||||||||| ||||||||| | | | |||||| |||||||||||| |||| ||| ||||||| || ||| || |
|
|
| T |
22621005 |
aaatgggagtaagatattgattacaacaagaagtatggatgttgctatttattgtaaaaaatcttcttttattgaggtgcatgaactacaacctttaact |
22620906 |
T |
|
| Q |
340 |
gaagaacaatctttggagttgttcaataagaagacattcc---acgacttaaacggacgttgtccagaaaatcttattgatatatcttcaaaaattgttg |
436 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| ||| | ||||| | ||| |||||||| || |||| |||||||||||||| |||||| | |
|
|
| T |
22620905 |
gaggaacaatcttttgagttgttcaataagaaggtatttcgatttgactttgatggaagttgtccaaaagatctaattgatatatcttccgaaattgcta |
22620806 |
T |
|
| Q |
437 |
aaaaatgcaatggattgccactagcaattgtactcattggtggtattttatct |
489 |
Q |
| |
|
||||||||| || || ||||||||||||||| | |||||||| |||||||| |
|
|
| T |
22620805 |
gaaaatgcaagggtttaccactagcaattgtagccgttggtggtcttttatct |
22620753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 18967303 - 18967036
Alignment:
| Q |
15 |
agtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatg |
114 |
Q |
| |
|
||||||||||||||| || ||||||| ||| | || ||||||||| |||| ||| ||||| ||||| ||| ||| || |||||| |||||||| |
|
|
| T |
18967303 |
agtgtctcaatcatatgatgtagaagggttgttaagcgacatgttgataaagtgatacaaacaaaaaggaaaggatccccctcagagtatttatcaaatg |
18967204 |
T |
|
| Q |
115 |
aatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgggatgata |
214 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| | ||| || ||||||||| | || |||||||| || |||| ||||||||||||||||||| |
|
|
| T |
18967203 |
gatcgagagtcattgacagatgaagtaagaaactacttacgggataagaggtatgttgttgtgtttgatgatgtttggagtttacatttttgggatgata |
18967104 |
T |
|
| Q |
215 |
tcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtt |
282 |
Q |
| |
|
| |||||| | | |||||||||||||| || |||| ||||| || |||||||| ||| |||||||| |
|
|
| T |
18967103 |
ttgaatttgttgtaattgataataaaaaaggaagtaacatattgataacaacaaggaacctggatgtt |
18967036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 145 - 377
Target Start/End: Complemental strand, 22615454 - 22615222
Alignment:
| Q |
145 |
aactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgggatgatatcaaatttgctatgattgataataaaaagg |
244 |
Q |
| |
|
|||||||||||| |||| ||||| ||| | || |||||||| ||||||||| | ||||||||| |||| || ||| |||| | |||||||||||||| | |
|
|
| T |
22615454 |
aactacttgcagcaaaagaggtacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatg |
22615355 |
T |
|
| Q |
245 |
gttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatcttcttttgttgaagtgtatgaactgaaaggtttggctgaaga |
344 |
Q |
| |
|
| |||||||||| || |||||||| || || |||||| || | ||||||||| |||||| || || ||||| |||| || || ||| ||||||| |
|
|
| T |
22615354 |
gaagtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagagatcttcgttagtcaaagtgcatgagttgcaacctttaactgaaga |
22615255 |
T |
|
| Q |
345 |
acaatctttggagttgttcaataagaagacatt |
377 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||| |
|
|
| T |
22615254 |
acaatctctggagttgtttaataagaaggcatt |
22615222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 3 - 378
Target Start/End: Original strand, 22034655 - 22035030
Alignment:
| Q |
3 |
tgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagt |
102 |
Q |
| |
|
||||||||| | ||||||||||||||| ||| ||||||||| |||| |||||||||| ||| ||| | || || |||||| | | ||| | || |
|
|
| T |
22034655 |
tgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgctaaaggtttgcaaagaaaaaggagtgacacctcccgagggt |
22034754 |
T |
|
| Q |
103 |
attcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatt |
202 |
Q |
| |
|
||| |||||||||||| ||||||||| |||||||||||| || |||||| | || ||||| || | || |||||||| || ||||| |||||| |
|
|
| T |
22034755 |
atttctcaaatgaatcgggagtcattgactgatgaagtgagaaatcacttgcggaaatcgaggtaccttgttgtctttgatgatgtttggaatgtacatt |
22034854 |
T |
|
| Q |
203 |
tttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatc |
302 |
Q |
| |
|
||||||||||||| ||||| || | ||||||| |||||| || |||||||||| || ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
22034855 |
tttgggatgatattgaattttctgtaattgatagtaaaaatggaagtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaatc |
22034954 |
T |
|
| Q |
303 |
ttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattc |
378 |
Q |
| |
|
|||||| |||| ||| ||| ||| || ||| || |||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
22034955 |
ttctttcattgaggtgcttgagctgcaacctttaactcaagaacaatcattgaagttgttcaataagaaggcattc |
22035030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 378
Target Start/End: Original strand, 21937291 - 21937666
Alignment:
| Q |
3 |
tgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagt |
102 |
Q |
| |
|
||||||||||| |||||||||| |||| || | ||||| ||| ||| ||||||||||| |||||||||| ||||| |||||| ||| || || |
|
|
| T |
21937291 |
tgtatggatcacagtgtctcaagcatatgatgttgaagggttgttgaaggacatgttgctcaagttttacaaacaaaaaggagaggatcctcctatgggt |
21937390 |
T |
|
| Q |
103 |
attcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatt |
202 |
Q |
| |
|
||| ||||||| |||||| ||||||| | |||||| | || |||||||||| ||| ||||| ||||| || |||||||| || |||| |||||| |
|
|
| T |
21937391 |
atttttcaaatggatcgagggtcattgatggatgaaattagaaactacttgcgaagaaagaggtacgttatcgtgtttgatgatgtttggagtctacatt |
21937490 |
T |
|
| Q |
203 |
tttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatc |
302 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| |||||| || ||| |||||| || |||||||| | || |||||| ||||||| ||||| |
|
|
| T |
21937491 |
tttgggatgatatcgaatttgctggaattgatagtaaaaatggaagtaggatatttataacaacaaggataattgatgttgtggtgtcttgtaaaaaatc |
21937590 |
T |
|
| Q |
303 |
ttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattc |
378 |
Q |
| |
|
|||||| ||||||| ||| || || |||| || | |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21937591 |
ttctttcattgaagttcttgagttgcaatgtttaactcatgaacaatctttggagttgttcaataagaaggcattc |
21937666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 227 - 377
Target Start/End: Complemental strand, 22648288 - 22648138
Alignment:
| Q |
227 |
tgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatcttcttttgttgaagtgtatgaact |
326 |
Q |
| |
|
|||||||||||||||| || |||||||||| || ||||||||||| ||||||||| | | |||||||||||||||||| |||||||||||||| | |
|
|
| T |
22648288 |
tgattgataataaaaatgggagtaagatatttattacaacaagaaatatggatgttgccatatattgtaagaaatcttctttcattgaagtgtatgaatt |
22648189 |
T |
|
| Q |
327 |
gaaaggtttggctgaagaacaatctttggagttgttcaataagaagacatt |
377 |
Q |
| |
|
| || ||| | | ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
22648188 |
gcaacctttaacaaatgaacaatcttttgagttgttcaacaagaagacatt |
22648138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 22179555 - 22179834
Alignment:
| Q |
3 |
tgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagc-aaatctcccccaaag |
101 |
Q |
| |
|
||||||||| | ||||||||||||||| ||| ||||||||| |||| |||||||||| ||| ||| | ||||| |||||| ||||||||| | | |
|
|
| T |
22179555 |
tgtatggattacagtgtctcaatcatataatgctgaaggattgttgagagacatgttgctaaagatttgcaaacaaaaaggagtgaaatctcccg-aggg |
22179653 |
T |
|
| Q |
102 |
tattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacat |
201 |
Q |
| |
|
|||| |||||||||||| ||||||||| | |||||||||| || |||||||||||| | ||| || | || |||||||| || ||||| || | |
|
|
| T |
22179654 |
tatttctcaaatgaatcgggagtcattgactaatgaagtgagaaattacttgcaggaatcgaagtacattgtcgtatttgatgatgtttggaatgaactt |
22179753 |
T |
|
| Q |
202 |
ttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtt |
282 |
Q |
| |
|
|||||||||||| | ||| |||| ||||||| |||||| || ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
22179754 |
ttttgggatgatgttgaatctgctgcaattgatagtaaaaatggaagtaagatattaataacaacaaggaacatggatgtt |
22179834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 22615587 - 22615521
Alignment:
| Q |
3 |
tgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttt |
69 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
22615587 |
tgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagttt |
22615521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 148 - 372
Target Start/End: Complemental strand, 22657249 - 22657025
Alignment:
| Q |
148 |
tacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt |
247 |
Q |
| |
|
||||||||| |||| ||||||||| | || |||||||| ||||||||| | |||||||||||| || ||| |||| | |||| ||||||| || |
|
|
| T |
22657249 |
tacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacaaaagtttttgggatgagattgaatatgctgttggtgatcataaaaatggga |
22657150 |
T |
|
| Q |
248 |
gtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatcttcttttgttgaagtgtatgaactgaaaggtttggctgaagaaca |
347 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||| | ||||||||||||||||||| |||||||| ||||||| | ||| | | |||||| |
|
|
| T |
22657149 |
gtaagatatttattacaacaagaaatatggatgttgcggtgtattgtaagaaatcttcttttattgaagtgcatgaactacatcctttaacagtagaaca |
22657050 |
T |
|
| Q |
348 |
atctttggagttgttcaataagaag |
372 |
Q |
| |
|
|||||| |||||||| ||||||||| |
|
|
| T |
22657049 |
atcttttgagttgtttaataagaag |
22657025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 587 - 645
Target Start/End: Complemental strand, 22430914 - 22430856
Alignment:
| Q |
587 |
gttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcct |
645 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22430914 |
gttaccatgatttgccttgcaacctcaagtcatgtttcttgtattttggattatatcct |
22430856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 587 - 649
Target Start/End: Complemental strand, 22436375 - 22436313
Alignment:
| Q |
587 |
gttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
|||||||||||||| ||||| | |||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
22436375 |
gttaccatgatttgccttactacctcaagtcgtgtttcttgtattttggattatatcctgaag |
22436313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 593 - 644
Target Start/End: Original strand, 22180157 - 22180208
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcc |
644 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22180157 |
atgatttgccttactatctcaagtcatgtttgttgtattttggagtatatcc |
22180208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 649
Target Start/End: Original strand, 21937893 - 21937949
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
21937893 |
atgatttgccttactatctcaagtcatgcttgttgtattttggagtatatccagaag |
21937949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 641
Target Start/End: Original strand, 22115825 - 22115873
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattata |
641 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
22115825 |
atgatttgccttactatctcaagtcatgtttgttgtattttggagtata |
22115873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 22052872 - 22053110
Alignment:
| Q |
4 |
gtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagta |
103 |
Q |
| |
|
|||||||| | ||||||||||||||| || | ||||| ||| ||||||| ||||||| || ||||| ||||| |||||| |||| || || |||| |
|
|
| T |
22052872 |
gtatggattacagtgtctcaatcatatgatgttgaagggttgttgagggaaatgttgctaaaactttacaaacaaaaaggagacaatccccatcagagta |
22052971 |
T |
|
| Q |
104 |
ttcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacattt |
203 |
Q |
| |
|
|| |||||||| |||||| ||||| |||||||||||| || ||| ||||| |||| |||| || | || |||||||| || ||||| |||||| |
|
|
| T |
22052972 |
tttatcaaatggatcgaggaacattgactgatgaagtgagaaattacctgcagaaaaagaggttcattgttgtatttgatgatgtttggaatgaacattt |
22053071 |
T |
|
| Q |
204 |
ttgggatgatatcaaatttgctatgattgataataaaaa |
242 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| |||||| |
|
|
| T |
22053072 |
ttggcatgatattgaatttgctgcaattgatagtaaaaa |
22053110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 649
Target Start/End: Complemental strand, 30989037 - 30988975
Alignment:
| Q |
587 |
gttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
30989037 |
gttacgatgatttgccttactctctcaagtcatgcttgttgtattttggaatatatccagaag |
30988975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 22187424 - 22187501
Alignment:
| Q |
301 |
tcttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattc |
378 |
Q |
| |
|
||||||||| |||| ||| |||||||| || ||| || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22187424 |
tcttcttttattgaggtgcatgaactgcaacctttatctctagaacaatctttggagttgttcaataagaaggcattc |
22187501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 643
Target Start/End: Complemental strand, 22353557 - 22353500
Alignment:
| Q |
587 |
gttaccatgatttgtctt-acaatctcaagtcatgtttgttgtattttggattatatc |
643 |
Q |
| |
|
|||||||||||||| ||| || | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
22353557 |
gttaccatgatttgcctttactacctcaagtcatgtttcttgtattttggattatatc |
22353500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 649
Target Start/End: Original strand, 22028740 - 22028796
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
|||||||| ||||| |||||||| |||| ||||||||||||||| ||||||| |||| |
|
|
| T |
22028740 |
atgatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaag |
22028796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 649
Target Start/End: Original strand, 22035257 - 22035313
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
|||||||| ||||| |||||||| |||| ||||||||||||||| ||||||| |||| |
|
|
| T |
22035257 |
atgatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaag |
22035313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 649
Target Start/End: Original strand, 22053446 - 22053502
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
22053446 |
atgatttgccttactatctcgagtcatgcttgttgtattttggagtatatccagaag |
22053502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 649
Target Start/End: Original strand, 22105448 - 22105504
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||| |||||| ||||||| |||| |
|
|
| T |
22105448 |
atgatttgccttactatctcaagtcatgcttgttgtactttggagtatatccagaag |
22105504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 649
Target Start/End: Original strand, 22187728 - 22187784
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
|||||||| ||||| |||||||| |||| ||||||||||||||| ||||||| |||| |
|
|
| T |
22187728 |
atgatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaag |
22187784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 22028436 - 22028506
Alignment:
| Q |
301 |
tcttcttttgttgaagtgtatgaactgaaaggtttggctgaagaacaatctttggagttgttcaataagaa |
371 |
Q |
| |
|
||||||||| |||| ||| |||||||| || ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
22028436 |
tcttcttttattgaggtgcatgaactgcaacctttatctctagaacaatctttggagttgttcaataagaa |
22028506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 649
Target Start/End: Complemental strand, 22656777 - 22656736
Alignment:
| Q |
608 |
atctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
22656777 |
atcttaagtcatgtttgttgtattttggaatatatccagaag |
22656736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 593 - 649
Target Start/End: Original strand, 21931161 - 21931217
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
|||||||| ||||| |||||||| |||| || |||||||||||| ||||||| |||| |
|
|
| T |
21931161 |
atgatttgccttactatctcaagccatgcttcttgtattttggagtatatccagaag |
21931217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 593 - 649
Target Start/End: Original strand, 21946364 - 21946420
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
649 |
Q |
| |
|
|||||||| ||| | ||||||||||||| ||||| ||||||||| ||||||| |||| |
|
|
| T |
21946364 |
atgatttgccttgctatctcaagtcatgcttgttttattttggagtatatccagaag |
21946420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 593 - 641
Target Start/End: Complemental strand, 22614997 - 22614949
Alignment:
| Q |
593 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattata |
641 |
Q |
| |
|
|||||||| ||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
22614997 |
atgatttgccttactatcttagatcatgtttgttgtattttggattata |
22614949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 29610899 - 29610697
Alignment:
| Q |
3 |
tgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaag-ttttacgaacaacaaggagcaaatctcccccaaag |
101 |
Q |
| |
|
||||||||||| ||| || |||||||||||||||||||||||||| |||| ||||||| | ||| |||||| ||||| | |||| ||| || ||||| |
|
|
| T |
29610899 |
tgtatggatcacagtatcacaatcatacaatatagaaggattgctaaggggcatgttggagaagtttttacaaacaaaagggagatgatcctcctcaaag |
29610800 |
T |
|
| Q |
102 |
tattcatcaaatgaatcgaga---gtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaactta |
198 |
Q |
| |
|
|||| ||||||| | ||||| ||| || || ||||||||||| || ||||||||||| |||||||| || |||| ||||| || |||||||||||| |
|
|
| T |
29610799 |
tatttctcaaatggagcgagagtcgtcgttagtcgatgaagtgagaaattacttgcaggagaaaaggtaccttgtagtgtttgacgatgtatggaactta |
29610700 |
T |
|
| Q |
199 |
cat |
201 |
Q |
| |
|
||| |
|
|
| T |
29610699 |
cat |
29610697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 29604842 - 29604805
Alignment:
| Q |
178 |
tttgatgacgtatggaacttacatttttgggatgatat |
215 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
29604842 |
tttgacgatgtatggaacttacatttttgggatgatat |
29604805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 148 - 377
Target Start/End: Original strand, 34989500 - 34989729
Alignment:
| Q |
148 |
tacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt |
247 |
Q |
| |
|
||||||||| |||| ||||||||| | || |||||||| ||||||||| | |||||||||||| || ||| || | ||| |||||||||||| ||| |
|
|
| T |
34989500 |
tacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggta |
34989599 |
T |
|
| Q |
248 |
gtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatcttcttttgttgaagtgtatgaactgaaaggtttggctgaagaaca |
347 |
Q |
| |
|
|||||||||| || || |||||||| | ||||||| | | ||||||||||||||| ||| |||||||| ||||||| || || |||||||||| |
|
|
| T |
34989600 |
gtaagatatttattaccacaagaaataaggatgttgccatgtattgtaagaaatcttcatttattgaagtgcatgaactacaaccattaactgaagaaca |
34989699 |
T |
|
| Q |
348 |
atctttggagttgttcaataagaagacatt |
377 |
Q |
| |
|
||| | || ||||||||||||||| |||| |
|
|
| T |
34989700 |
atcaattgatttgttcaataagaaggcatt |
34989729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 148 - 326
Target Start/End: Complemental strand, 2305668 - 2305490
Alignment:
| Q |
148 |
tacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt |
247 |
Q |
| |
|
||||||||| | || ||||||||| | || |||||| | ||||||||| | |||||||||||| || ||| |||||||| |||| ||||||| ||| |
|
|
| T |
2305668 |
tacttgcagaataagaggtatgtttttgtgtttgataatgtatggaacacaagtttttgggatgagattgaatatgctatgagtgatcataaaaatggta |
2305569 |
T |
|
| Q |
248 |
gtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatcttcttttgttgaagtgtatgaact |
326 |
Q |
| |
|
|||||||||| || || |||||||| ||||||||| | | ||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
2305568 |
gtaagatatttattaccacaagaaatatggatgttgccatatattgtaagaaatcttcttttattcaagtgcatgaact |
2305490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 34980300 - 34980551
Alignment:
| Q |
3 |
tgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagt |
102 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| |||| ||||||||| ||||||| | ||| ||||||||||| |||||| | ||| | || | |
|
|
| T |
34980300 |
tgtatggatcacagtgtcacaatcatacaatattgaagtattgctgagacgcatgttgaagaagctttacgaacaaaaaggagaacatcctcttgaagat |
34980399 |
T |
|
| Q |
103 |
attcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatt |
202 |
Q |
| |
|
|| | ||||| ||||||| ||||| || |||| |||| || ||||||||| |||| ||||||||| | || |||||||| ||||||||| | || |
|
|
| T |
34980400 |
atcactgaaatggatcgagatgcattgatttatgagttgagaaattacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtt |
34980499 |
T |
|
| Q |
203 |
tttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagat |
254 |
Q |
| |
|
|||||||||| || ||| || | ||| |||||||||||| ||| ||||||| |
|
|
| T |
34980500 |
tttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat |
34980551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 34975665 - 34975772
Alignment:
| Q |
148 |
tacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt |
247 |
Q |
| |
|
||||||||| |||| ||||||||| | || |||||||| ||||||||| | |||||||||||| || ||| || | ||| |||||||||||| ||| |
|
|
| T |
34975665 |
tacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggta |
34975764 |
T |
|
| Q |
248 |
gtaagata |
255 |
Q |
| |
|
|||||||| |
|
|
| T |
34975765 |
gtaagata |
34975772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 872948 - 872774
Alignment:
| Q |
108 |
tcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgg |
207 |
Q |
| |
|
||||||| |||||| ||||||| | |||||||||| || ||||||||| |||| | || ||| | || ||| |||| | |||| | |||||||| | |
|
|
| T |
872948 |
tcaaatggatcgagtgtcattgactaatgaagtgagaaattacttgcagcaaaagacatacgttgttgtgtttaatgatttttggagcgtacattttatg |
872849 |
T |
|
| Q |
208 |
gatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtt |
282 |
Q |
| |
|
|||||||| |||||| | | ||||||||||||||||| |||||||||| |||||| ||| |||||| ||||| |
|
|
| T |
872848 |
gatgatattgaatttgttgtaattgataataaaaagggaagtaagatatttatcacagcaatgaacatgaatgtt |
872774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 1234225 - 1234051
Alignment:
| Q |
108 |
tcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgacgtatggaacttacatttttgg |
207 |
Q |
| |
|
||||||| |||||| ||||||| | |||||||||| || ||||||||| |||| | || ||| | || ||| |||| | |||| | |||||||| | |
|
|
| T |
1234225 |
tcaaatggatcgagtgtcattgactaatgaagtgagaaattacttgcagcaaaagacatacgttgttgtgtttaatgatttttggagcgtacattttatg |
1234126 |
T |
|
| Q |
208 |
gatgatatcaaatttgctatgattgataataaaaagggttgtaagatattaatcacaacaagaaacatggatgtt |
282 |
Q |
| |
|
|||||||| |||||| | | ||||||||||||||||| |||||||||| |||||| ||| |||||| ||||| |
|
|
| T |
1234125 |
gatgatattgaatttgttgtaattgataataaaaagggaagtaagatatttatcacagcaatgaacatgaatgtt |
1234051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1439
Description:
Target: scaffold1439; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 377
Target Start/End: Complemental strand, 1686 - 1547
Alignment:
| Q |
238 |
aaaaagggttgtaagatattaatcacaacaagaaacatggatgtttcaaatgcttgtaagaaatcttcttttgttgaagtgtatgaactgaaaggtttgg |
337 |
Q |
| |
|
||||| ||| |||||||||| || || |||||||| ||||||||| | ||||||||||||||||||| |||||||| ||||||| || ||| |
|
|
| T |
1686 |
aaaaatggtagtaagatatttattaccacaagaaatatggatgttgctgtgtattgtaagaaatcttcttttattgaagtgcatgaactacaacctttaa |
1587 |
T |
|
| Q |
338 |
ctgaagaacaatctttggagttgttcaataagaagacatt |
377 |
Q |
| |
|
|||||||| |||| || || ||||| ||||||||| |||| |
|
|
| T |
1586 |
ctgaagaaaaatcatttgatttgtttaataagaaggcatt |
1547 |
T |
|
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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 40580264 - 40580320
Alignment:
| Q |
201 |
tttttgggatgatatcaaatttgctatgattgataataaaaagggttgtaagatatt |
257 |
Q |
| |
|
|||||||| |||||| ||| |||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
40580264 |
tttttggggtgatattgaatatgctatgagtgataataaaaatggtagtaagatatt |
40580320 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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