View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_50 (Length: 314)
Name: NF1362_low_50
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8102705 - 8102922
Alignment:
| Q |
1 |
ttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcggaacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8102705 |
ttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtgggtctaattggtcggaacg |
8102804 |
T |
|
| Q |
101 |
gatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatattttgttcgtatccgtttctaagttggctttcaatttcaattgagagattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8102805 |
gatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatattttgttcgtacccgtttctaagttggctttcaatttcaattgagagattttc |
8102904 |
T |
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| Q |
201 |
tcctttgtgaaatgaaat |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
8102905 |
tcctttgtgaaatgaaat |
8102922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 40147240 - 40147027
Alignment:
| Q |
1 |
ttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcggaacg |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |||| |||||||| |||||||| |||| | | || ||||| || ||||| | |||||| |
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| T |
40147240 |
ttccaaaataatcttcaggcaatggtggaacaaaccttgatctagctcctatcgcgaccatataataaacttcttcgtgtgggtcaaattgtttggaacg |
40147141 |
T |
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| Q |
101 |
gatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatattttgttcgtatccgtttctaagttggctttcaatttcaattgagagattttc |
200 |
Q |
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|||||| |||| |||||| |||| |||||||| ||| ||||| ||||||||||| ||| | | || | ||||||||||||||||| ||||| ||||||| |
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| T |
40147140 |
gatcacagagcgccaaagatgtgtaaaaagtgattggagggatgatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttc |
40147041 |
T |
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| Q |
201 |
tcctttgtgaaatg |
214 |
Q |
| |
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|||||||||||||| |
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| T |
40147040 |
tcctttgtgaaatg |
40147027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 7606480 - 7606631
Alignment:
| Q |
1 |
ttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcggaacg |
100 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||| ||| |||||||||| |||| | | |||| | | |||||| | || ||||| | |||||| |
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| T |
7606480 |
ttccaaaataatcttctggtaatggtggaacaaaccttggtccaactcctatcacgactagattatatacttcttcttgtaggtcaaattgtttggaacg |
7606579 |
T |
|
| Q |
101 |
gatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatattttg |
152 |
Q |
| |
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|| || |||||||||||||| | ||||| ||||| || |||| ||||||| |
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| T |
7606580 |
gacgacagagcaccaaaggtgagttaaaagcgcttgtagagaagttattttg |
7606631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7656012 - 7655961
Alignment:
| Q |
1 |
ttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctat |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
7656012 |
ttccaaaataatcttccggcaatggtggaacaagtcttggtctaactcctat |
7655961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 7637311 - 7637528
Alignment:
| Q |
1 |
ttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcggaacg |
100 |
Q |
| |
|
|||||||||||||||| || || |||||||| |||||| ||| |||||||||| |||| || | || | | |||||||| || ||||| | | |||| |
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| T |
7637311 |
ttccaaaataatcttctggtaacggtggaactaaccttggtcgaactcctatcacgactctattaaatacttcttcttgtgggtcaaattgtttgaaacg |
7637410 |
T |
|
| Q |
101 |
gatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatattttgttcgtatccgtttctaagttggctttcaatttcaattgagagattttc |
200 |
Q |
| |
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| |||| ||||||||| ||| | ||||||||||| || |||||||||||| | || | | ||| |||| |||| |||||||||| ||||||| |
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| T |
7637411 |
ggtcacatagcaccaaacgtgagttaaaagtgcttgtagagaagatattttggtggtgccgatctcttcgttgattttcgatttcaattgtaggattttc |
7637510 |
T |
|
| Q |
201 |
tcctttgtgaaatgaaat |
218 |
Q |
| |
|
|||||||||||||||||| |
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| T |
7637511 |
tcctttgtgaaatgaaat |
7637528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7628865 - 7628922
Alignment:
| Q |
1 |
ttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgac |
58 |
Q |
| |
|
|||||||||||||||| || |||||||||| || |||| |||||||||||||| |||| |
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|
| T |
7628865 |
ttccaaaataatcttctggtaatggtggaataagccttggtctaactcctatcgcgac |
7628922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7615494 - 7615546
Alignment:
| Q |
1 |
ttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatc |
53 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| |||||| ||| |||||||||| |
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| T |
7615494 |
ttccaaaataatattctggtaatggtggaactaaccttggtcgaactcctatc |
7615546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8938752 - 8938715
Alignment:
| Q |
1 |
ttccaaaataatcttccggcaatggtggaacaaacctt |
38 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |
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|
| T |
8938752 |
ttccaaaataatcttctggtaatggtggaacaaacctt |
8938715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8911037 - 8910985
Alignment:
| Q |
1 |
ttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatc |
53 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| |||||| ||| |||||||||| |
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| T |
8911037 |
ttccaaaataatattctggtaatggtggaactaaccttggtccaactcctatc |
8910985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8935976 - 8935924
Alignment:
| Q |
1 |
ttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatc |
53 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| |||||| ||| |||||||||| |
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|
| T |
8935976 |
ttccaaaataatattctggtaatggtggaactaaccttggtccaactcctatc |
8935924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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