View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_low_54 (Length: 305)

Name: NF1362_low_54
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_low_54
NF1362_low_54
[»] chr3 (2 HSPs)
chr3 (1-195)||(8525319-8525502)
chr3 (265-294)||(8525220-8525249)
[»] chr6 (1 HSPs)
chr6 (68-174)||(25520646-25520752)
[»] chr5 (2 HSPs)
chr5 (60-126)||(42125916-42125982)
chr5 (261-293)||(42125748-42125780)
[»] chr2 (1 HSPs)
chr2 (105-178)||(12250641-12250710)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 8525502 - 8525319
Alignment:
Q  1 gttgctatgtgttggtccaccaaggaaaaacaatcactaaatattgtttctgaaaatattgtatttccaatttggatataaatatagatgttgcgttcct 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||    
T  8525502 gttgcgatgtgttggtccaccaaggaaaaacaatcactaaatattgtttttgaaaatattgtattttcaatttggatataaatatagacgttgtgttcct 8525403  T
Q  101 taaaatttcatccacacttacttttcaattgatcttcattcacataaaccatttggtaacactttccacaaaatcatttattcataatggtgtgg 195  Q
    |||||| ||||||||||||| ||           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8525402 taaaatatcatccacacttagtt-----------ttcattcacataaaccatttggtaacactttccacaaaatcatatattcataatggtgtgg 8525319  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 294
Target Start/End: Complemental strand, 8525249 - 8525220
Alignment:
Q  265 catcattatgagagctctgctttgcttcat 294  Q
    ||||||||||||||||||||||||||||||    
T  8525249 catcattatgagagctctgctttgcttcat 8525220  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 25520646 - 25520752
Alignment:
Q  68 caatttggatataaatatagatgttgcgttccttaaaatttcatccacacttacttttcaattgatcttcattcacataaaccatttggtaacactttcc 167  Q
    |||||||| |||||||||  | |||| || ||||   |||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||    
T  25520646 caatttggctataaatatttacgttgtgtcccttggcatttcatccacacttacttttctattgtttttcattcacataaaccatttagtaacactttcc 25520745  T
Q  168 acaaaat 174  Q
    | |||||    
T  25520746 aaaaaat 25520752  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 42125982 - 42125916
Alignment:
Q  60 tgtatttccaatttggatataaatatagatgttgcgttccttaaaatttcatccacacttacttttc 126  Q
    ||||||| |||||||| |||||||||  | |||| ||| ||||  ||||||||||||||||||||||    
T  42125982 tgtattttcaatttggctataaatatttaggttgtgtttcttaccatttcatccacacttacttttc 42125916  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 42125780 - 42125748
Alignment:
Q  261 atgtcatcattatgagagctctgctttgcttca 293  Q
    |||||||||| ||||||||||||||||||||||    
T  42125780 atgtcatcatgatgagagctctgctttgcttca 42125748  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 12250710 - 12250641
Alignment:
Q  105 atttcatccacacttacttttcaattgatcttcattcacataaaccatttggtaacactttccacaaaatcatt 178  Q
    ||||||||||||||| |||||| |||| | ||| ||||  ||||||||||    ||||||||||||||||||||    
T  12250710 atttcatccacacttgcttttctattggttttctttcagttaaaccattt----acactttccacaaaatcatt 12250641  T

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