View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_low_58 (Length: 275)

Name: NF1362_low_58
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_low_58
NF1362_low_58
[»] chr3 (14 HSPs)
chr3 (1-179)||(22458795-22458973)
chr3 (1-179)||(22481776-22481954)
chr3 (4-154)||(22468257-22468407)
chr3 (13-122)||(22368230-22368339)
chr3 (15-121)||(22358322-22358428)
chr3 (15-121)||(22635823-22635929)
chr3 (2-178)||(22431459-22431634)
chr3 (4-122)||(22630748-22630866)
chr3 (1-98)||(30989611-30989708)
chr3 (1-103)||(22115143-22115245)
chr3 (2-103)||(21937211-21937312)
chr3 (1-38)||(22615565-22615602)
chr3 (75-179)||(22443119-22443223)
chr3 (34-158)||(22632204-22632328)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 22458795 - 22458973
Alignment:
Q  1 attgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  22458795 attgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctt 22458894  T
Q  101 tccaacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaacttcaaag 179  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  22458895 tccaacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaag 22458973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 22481776 - 22481954
Alignment:
Q  1 attgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  22481776 attgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctt 22481875  T
Q  101 tccaacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaacttcaaag 179  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  22481876 tccaacaatggtgacaattgtgtgcacttctctctcctctatcaaccaatcaattagtatgtctcttggaacttcaaag 22481954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 22468257 - 22468407
Alignment:
Q  4 gagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctttcc 103  Q
    |||||||  |||||||||||||||||||||| |||||||||| ||| |  | ||||||||| ||||| || | ||| ||||||||  |||||||| ||||    
T  22468257 gagacaccgtgatccatacatgacaatcaaaatgtttaacgaccttttggttgtcaaaaactttcttggctatagtggtttttcccagtcctcccattcc 22468356  T
Q  104 aacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaat 154  Q
    ||| |||| |||||  ||| || || ||||  ||||||||||| |||||||    
T  22468357 aactatggagacaacggtgcgctctgctcttccctctaccaacaaatcaat 22468407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 22368230 - 22368339
Alignment:
Q  13 tgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctttccaacaatggt 112  Q
    ||||||||| | ||||||||||||||||||||| ||| |  | ||||||||| ||||| || ||||| ||||||||  |||||||| ||||||||||||     
T  22368230 tgatccataaacgacaatcaaagtgtttaacgaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatgga 22368329  T
Q  113 gacaattgtg 122  Q
    ||||| ||||    
T  22368330 gacaactgtg 22368339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 22358322 - 22358428
Alignment:
Q  15 atccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctttccaacaatggtga 114  Q
    ||||||||| ||| |||||||||||| |||| |||    | ||||||||| |||||||| ||||| ||||||||  |||||||| |||||||||||| ||    
T  22358322 atccatacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggaga 22358421  T
Q  115 caattgt 121  Q
    |||||||    
T  22358422 caattgt 22358428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 22635823 - 22635929
Alignment:
Q  15 atccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctttccaacaatggtga 114  Q
    ||||||||| |||||||||||| ||| |||| |||    | ||||||||| |||||||| ||||| |||||||||||||||||| ||||||  |||| ||    
T  22635823 atccatacacgacaatcaaagtattttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttccttgtcctcccattccaaagatggaga 22635922  T
Q  115 caattgt 121  Q
    |||||||    
T  22635923 caattgt 22635929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 178
Target Start/End: Original strand, 22431459 - 22431634
Alignment:
Q  2 ttgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctcccttt 101  Q
    |||||||||| ||||||||| | |||||||||||||||||| || | |||| | ||||||||| ||||| |  ||||| ||||||||  |||||||| ||    
T  22431459 ttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccatt 22431558  T
Q  102 ccaacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaacttcaaa 178  Q
    || ||||||| ||| | |||| || ||||| |  | | ||||| ||||||||| | ||||| ||||||  |||||||    
T  22431559 cc-acaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaa 22431634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 22630748 - 22630866
Alignment:
Q  4 gagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctttcc 103  Q
    |||||||  |||||||| |||||||||||||||||||||||| |||    | ||||||||  ||||| |||||||| ||||| ||  |||||||| ||||    
T  22630748 gagacaccgtgatccattcatgacaatcaaagtgtttaacgacctttcggttgtcaaaaattttcttggcaagagtggttttccccagtcctcccattcc 22630847  T
Q  104 aacaatggtgacaattgtg 122  Q
    |||||| | ||||| ||||    
T  22630848 aacaatagagacaactgtg 22630866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 30989611 - 30989708
Alignment:
Q  1 attgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccc 98  Q
    ||||||||||| ||||||||||| ||||||||||||||  || ||  ||  | | ||||||||| ||||||| |||||| ||||| ||||| ||||||    
T  30989611 attgagacactatgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccctccc 30989708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 22115245 - 22115143
Alignment:
Q  1 attgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctt 100  Q
    ||||||||||| ||||||||||| ||||||||||||||  || ||| |  ||   ||||||||| ||||| |  ||||| ||||||||||| |||||| |    
T  22115245 attgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgccctcccat 22115146  T
Q  101 tcc 103  Q
    |||    
T  22115145 tcc 22115143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 21937312 - 21937211
Alignment:
Q  2 ttgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctcccttt 101  Q
    |||||||||| ||||||||||| ||||||||||||||  |||||  |  ||   ||||||| | ||||| || ||||| ||||||||||| |||||| ||    
T  21937312 ttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctcccatt 21937213  T
Q  102 cc 103  Q
    ||    
T  21937212 cc 21937211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22615565 - 22615602
Alignment:
Q  1 attgagacactctgatccatacatgacaatcaaagtgt 38  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  22615565 attgagacactgtgatccatacacgacaatcaaagtgt 22615602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 22443119 - 22443223
Alignment:
Q  75 agagttgtttttccttgtcctccctttccaacaatggtgacaattgtgtgcacttctctctcctctaccaaccaatcaattagtatgtttcttggaactt 174  Q
    ||||| ||||||||   ||||||| |||||||||||| ||||| |||| |  |||||||  ||||||||||| ||||||| | | ||| ||||||  |||    
T  22443119 agagtggtttttcccaatcctcccattccaacaatggagacaactgtgcggtcttctcttccctctaccaacaaatcaatcaatttgtctcttggctctt 22443218  T
Q  175 caaag 179  Q
    |||||    
T  22443219 caaag 22443223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 22632204 - 22632328
Alignment:
Q  34 agtgtttaacgatcttgttatcgtcaaaaaccttcttcgcaagagttgtttttccttgtcctccctttccaacaatggtgacaattgtgtgcacttctct 133  Q
    ||||||||||||||||    | ||||||||| ||||| || ||||| ||||| ||  |||||||| |||||| ||||| ||||| |||| |  || ||||    
T  22632204 agtgtttaacgatctttcggttgtcaaaaactttcttggctagagtggttttccccagtcctcccattccaataatggagacaactgtgcgatctgctct 22632303  T
Q  134 ctcctctaccaaccaatcaattagt 158  Q
      ||||||||| ||||| |||||||    
T  22632304 tccctctaccagccaattaattagt 22632328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University