View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_59 (Length: 272)
Name: NF1362_low_59
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_59 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 30876479 - 30876237
Alignment:
| Q |
30 |
acctcaacaccacaatctatacgttaaacttaaacatttagtatatgagaaacctctcttatatatctttcattcaggtcgtttatagtcgatgtgagac |
129 |
Q |
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| T |
30876479 |
acctcaacaccacaatctatacgttaaacttaaacatttagtatatgagaaacctctcttatatatctttcattcaggttgtttatagttgatgtgagac |
30876380 |
T |
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| Q |
130 |
taaccactcacacttaaattcaacatcatgcttatagtttgaattgtaaagcaaaaataccagtagaaataaatatgttaaatcagtcattcatcactaa |
229 |
Q |
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| T |
30876379 |
taaccactaacacttaaattcaacatcatgcttatagtttgaattgtaaagcaaaaatactagtagaaataaatatgttaaatcagtcattcatcactaa |
30876280 |
T |
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| Q |
230 |
aaatctgattattattatttccttttaatgacacagatggaca |
272 |
Q |
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| T |
30876279 |
aaatctgattattattatttccttttaatgacacagatggaca |
30876237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 25848985 - 25848953
Alignment:
| Q |
112 |
ttatagtcgatgtgagactaaccactcacactt |
144 |
Q |
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| T |
25848985 |
ttatagtcgatgttagactaaccactcacactt |
25848953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 17488948 - 17489007
Alignment:
| Q |
86 |
tcttatatatctttcattcaggtcgtttatagtcgatgtgagactaaccactcacactta |
145 |
Q |
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| T |
17488948 |
tcttatatatctttcatttagctcatttatagttgatgtaagactaaccactcaaactta |
17489007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 5272672 - 5272711
Alignment:
| Q |
111 |
tttatagtcgatgtgagactaaccactcacacttaaattc |
150 |
Q |
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| T |
5272672 |
tttatagtcgatgtgagactaaccactcacatttgaattc |
5272711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 26534704 - 26534639
Alignment:
| Q |
84 |
tctcttatatatctttcattcaggtcgtttatagtcgatgtgagactaaccactcacacttaaatt |
149 |
Q |
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| T |
26534704 |
tctcttatatatccttcatttttctcatttatagtcaatgtgagactaatcattcacacttaaatt |
26534639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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