View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_63 (Length: 266)
Name: NF1362_low_63
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 30500538 - 30500691
Alignment:
| Q |
30 |
aatacaattaattaaatggcaccctataagttataactctatctttattttctcacctttttatcaattttacggattactaaaatacacaaaacaaaac |
129 |
Q |
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| T |
30500538 |
aataaaattaattaaatggcaccctata-------actctatctttattttctcaactttttatcaattttacggattactaaaatacac--aacaaaaa |
30500628 |
T |
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| Q |
130 |
acaagagagcaacaaattttcatcaattttctgtgtccgtttagcatttctgtttagttttta |
192 |
Q |
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| T |
30500629 |
acaagagaacaacaaattttcatcaattttccgtgtccttttagcatttctgtttagttttta |
30500691 |
T |
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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 30501471 - 30501546
Alignment:
| Q |
192 |
atgtgcccgtttagcatttcttcactaaactatcattgattcttnnnnnnnt-attaattgttttacctattattt |
266 |
Q |
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| T |
30501471 |
atgtgcccgtttagcatttcttcactgaactatcattgattcttaaaaaaataattaattgttttacctattattt |
30501546 |
T |
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