View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_64 (Length: 263)
Name: NF1362_low_64
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 7840371 - 7840481
Alignment:
| Q |
133 |
aagtttcttgttctttatttcgtttcatttacttttcatcaatgtaaatgattttcttctatcaatcaagtggtctttcgagccatttgaattctttaat |
232 |
Q |
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| T |
7840371 |
aagtttcttgttctttatttgatttcatttacttttcatcaatgtaaatgattttcttctatcaatcaagtggtctttcgagccacttgaattctttaat |
7840470 |
T |
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| Q |
233 |
ttatattcttc |
243 |
Q |
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|||| |||||| |
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| T |
7840471 |
ttattttcttc |
7840481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 7840252 - 7840353
Alignment:
| Q |
41 |
acctaatatcaagtccacggtacgttcgcaaattaatgggtcgctgcaacgtttcaacaattttaatttcagtcattatatctcttttctttaagtttct |
140 |
Q |
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| T |
7840252 |
acctaatatcaagtccacggt--gttcgcaaattaatgggtcgctacaacgtttcaacaattttaatttcagtaattatatttcttttctttaagtttct |
7840349 |
T |
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| Q |
141 |
tgtt |
144 |
Q |
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|||| |
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| T |
7840350 |
tgtt |
7840353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 33831057 - 33831107
Alignment:
| Q |
125 |
ttttctttaagtttcttgttctttatttcgtttcatttacttttcatcaat |
175 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
33831057 |
ttttctttaattttcttgttctttatttggtttcatttacttttcatcaat |
33831107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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