View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1362_low_7 (Length: 560)

Name: NF1362_low_7
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1362_low_7
NF1362_low_7
[»] chr8 (8 HSPs)
chr8 (215-484)||(16440501-16440776)
chr8 (84-165)||(16440352-16440442)
chr8 (30-75)||(16440275-16440320)
chr8 (421-484)||(16372581-16372644)
chr8 (401-443)||(16449532-16449574)
chr8 (190-222)||(5135261-5135293)
chr8 (401-481)||(16354420-16354500)
chr8 (189-221)||(39162265-39162297)
[»] chr6 (13 HSPs)
chr6 (402-451)||(27717991-27718040)
chr6 (390-475)||(28140164-28140249)
chr6 (402-451)||(28786879-28786928)
chr6 (402-451)||(28793000-28793049)
chr6 (402-442)||(26803087-26803127)
chr6 (402-461)||(27705886-27705945)
chr6 (401-451)||(26656605-26656655)
chr6 (401-451)||(26762576-26762626)
chr6 (390-483)||(26937658-26937751)
chr6 (402-451)||(27427104-27427153)
chr6 (402-451)||(27679591-27679640)
chr6 (402-438)||(27610625-27610661)
chr6 (402-442)||(27677121-27677161)
[»] chr4 (3 HSPs)
chr4 (402-451)||(18679048-18679097)
chr4 (402-451)||(18698888-18698937)
chr4 (402-451)||(18074402-18074451)
[»] chr5 (3 HSPs)
chr5 (399-443)||(17790746-17790790)
chr5 (399-461)||(17801695-17801757)
chr5 (399-445)||(17817631-17817677)
[»] scaffold0349 (1 HSPs)
scaffold0349 (402-451)||(3031-3080)
[»] scaffold0003 (1 HSPs)
scaffold0003 (402-451)||(60210-60259)
[»] scaffold0419 (1 HSPs)
scaffold0419 (402-442)||(8128-8168)
[»] scaffold0277 (2 HSPs)
scaffold0277 (402-442)||(4213-4253)
scaffold0277 (402-442)||(13176-13216)
[»] chr7 (1 HSPs)
chr7 (189-221)||(32002076-32002108)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 215 - 484
Target Start/End: Original strand, 16440501 - 16440776
Alignment:
Q  215 ttaaaaagaaagtgtaactaacttttacttctaataatctttattttataagaacaaaa------tgaaaatgaaagcatgcatcttaatatatcttgac 308  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||      |||||||||||||||||||||||||||||||||||    
T  16440501 ttaaaaagaaagtgcaactaacttttacttctaataatctttattatataagaacaaaatgaaaatgaaaatgaaagcatgcatcttaatatatcttgac 16440600  T
Q  309 acaagtttctctaattgggcatgcaggcatggagaatctgaattcattgagactattgttaagaaagtcagtagcaaagttaatcgtgctcctttacatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16440601 acaagtttctctaattgggcatgcaggcatggagaatctgaattcattgagactattgttaagaaagtcggtagcaaagttaatcgtgctcctttacatg 16440700  T
Q  409 ttgctaattaccctgttggattggagtctcgagtgcaccaagtaaactcacttttggatcttggttctgatgatgt 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16440701 ttgctaattaccctgttggattggagtctcgagtgcaccaagtaaactcacttttggatcttggttctgatgatgt 16440776  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 16440352 - 16440442
Alignment:
Q  84 tatttaccattttcattgctgagaaaaataaaatgagatgatacaatatgac---------tggccaataagaactactaacaaggggaga 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||| |||||||||||||||||||||||||    
T  16440352 tatttaccattttcattgctgagaaaaataaaatgagatgatacaatatgactgacatctatggctaataagaactactaacaaggggaga 16440442  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 16440275 - 16440320
Alignment:
Q  30 acttccagttccagtatgggttctctgatcctttacctgattttat 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16440275 acttccagttccagtatgggttctctgatcctttacctgattttat 16440320  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 484
Target Start/End: Complemental strand, 16372644 - 16372581
Alignment:
Q  421 ctgttggattggagtctcgagtgcaccaagtaaactcacttttggatcttggttctgatgatgt 484  Q
    |||||||| | ||| |||||||| || | |||||||||||| ||||||||||||||||| ||||    
T  16372644 ctgttggaattgagcctcgagtgaacaacgtaaactcacttctggatcttggttctgataatgt 16372581  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 16449532 - 16449574
Alignment:
Q  401 tttacatgttgctaattaccctgttggattggagtctcgagtg 443  Q
    |||||||||||| ||||| || |||||||||||||||||||||    
T  16449532 tttacatgttgcgaattatccagttggattggagtctcgagtg 16449574  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 5135261 - 5135293
Alignment:
Q  190 acaattaacatactaacatatgccattaaaaag 222  Q
    ||||||||||||||||||| |||||||||||||    
T  5135261 acaattaacatactaacatttgccattaaaaag 5135293  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 481
Target Start/End: Complemental strand, 16354500 - 16354420
Alignment:
Q  401 tttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagtaaactcacttttggatcttggttctgatga 481  Q
    |||||||||||| ||||| || ||||||||| |||||||| || |  ||||||| |||| | || ||||||| ||||||||    
T  16354500 tttacatgttgcaaattatccagttggattgaagtctcgaatggataaagtaaagtcacatctgaatcttgggtctgatga 16354420  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 39162265 - 39162297
Alignment:
Q  189 aacaattaacatactaacatatgccattaaaaa 221  Q
    |||||||||||||||||||| ||||||||||||    
T  39162265 aacaattaacatactaacatttgccattaaaaa 39162297  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 27718040 - 27717991
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    ||||||||||| |||||||||||||||||| |||||||||| || |||||    
T  27718040 ttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagt 27717991  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 475
Target Start/End: Original strand, 28140164 - 28140249
Alignment:
Q  390 aatcgtgctcctttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagtaaactcacttttggatcttggttc 475  Q
    |||||| ||||||||||||||||  ||||||| |||||| | ||||||||| |||  ||| |||| |||||| ||||| |||||||    
T  28140164 aatcgtactcctttacatgttgcggattacccggttggaatagagtctcgattgctacaaataaaatcacttctggatgttggttc 28140249  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 28786879 - 28786928
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    ||||||||||| |||||||||||||||||| |||||||||| || |||||    
T  28786879 ttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagt 28786928  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 28793000 - 28793049
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    ||||||||||| |||||||||||||||||| |||||||||| || |||||    
T  28793000 ttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagt 28793049  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 26803087 - 26803127
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagt 442  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  26803087 ttacatgttgctaattaccctgttggattgcactctcgagt 26803127  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 27705945 - 27705886
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagtaaactcactt 461  Q
    ||||||||||| | |||||||||||||||| |||||||||| || ||||| || ||||||    
T  27705945 ttacatgttgccacttaccctgttggattgcagtctcgagtacaacaagtgaaatcactt 27705886  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 26656605 - 26656655
Alignment:
Q  401 tttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    |||||||||||| || |||||||||||||| ||||||||||| || |||||    
T  26656605 tttacatgttgccaaataccctgttggattagagtctcgagtacaacaagt 26656655  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 26762576 - 26762626
Alignment:
Q  401 tttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    |||||||||||| || |||||||||||||| ||||||||||| || |||||    
T  26762576 tttacatgttgccaaataccctgttggattagagtctcgagtacaacaagt 26762626  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 483
Target Start/End: Original strand, 26937658 - 26937751
Alignment:
Q  390 aatcgtgctcctttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagtaaactcacttttggatcttggttctgatgatg 483  Q
    |||||| ||||||||||||||||  ||||||| |||||| || |||||||| |||  |||||||| || ||| || || |||| | ||||||||    
T  26937658 aatcgtcctcctttacatgttgcggattaccccgttggactgcagtctcgattgctacaagtaaattctcttctgaatattggatatgatgatg 26937751  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 27427153 - 27427104
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    ||||||||||| | |||||||||||||||| |||||||||| || |||||    
T  27427153 ttacatgttgccacttaccctgttggattgcagtctcgagtacaacaagt 27427104  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 27679591 - 27679640
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    ||||||||||| | |||||||||||||||| |||||||||| || |||||    
T  27679591 ttacatgttgccacttaccctgttggattgcagtctcgagtacaacaagt 27679640  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 27610661 - 27610625
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctc 438  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  27610661 ttacatgttgccaattaccctgttggattgcagtctc 27610625  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 27677161 - 27677121
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagt 442  Q
    ||||||||||| | |||||||||||||||| ||||||||||    
T  27677161 ttacatgttgccacttaccctgttggattgcagtctcgagt 27677121  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 18679097 - 18679048
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    ||||||||||| |||||||||||||||||| |||||||||| || |||||    
T  18679097 ttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagt 18679048  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 18698937 - 18698888
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    ||||||||||| |||||||||||||||||| |||||||||| || |||||    
T  18698937 ttacatgttgccaattaccctgttggattgcagtctcgagtacaacaagt 18698888  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 18074402 - 18074451
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    ||||||||||| | |||||||||||||||| |||||||||| || |||||    
T  18074402 ttacatgttgccacttaccctgttggattgcagtctcgagtacaacaagt 18074451  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 17790746 - 17790790
Alignment:
Q  399 cctttacatgttgctaattaccctgttggattggagtctcgagtg 443  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||    
T  17790746 cctttacatgttgctaaataccctgttgggttagagtctcgagtg 17790790  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 461
Target Start/End: Original strand, 17801695 - 17801757
Alignment:
Q  399 cctttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagtaaactcactt 461  Q
    |||||||||||||| || |||||| |||| || ||||||||||||||  |||| |||||||||    
T  17801695 cctttacatgttgccaaataccctattggtttagagtctcgagtgcaaaaagtgaactcactt 17801757  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 17817631 - 17817677
Alignment:
Q  399 cctttacatgttgctaattaccctgttggattggagtctcgagtgca 445  Q
    ||||||||||||||||| |||| |||||| || ||||||||||||||    
T  17817631 cctttacatgttgctaaataccatgttgggttagagtctcgagtgca 17817677  T

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Target: scaffold0349 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 3080 - 3031
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    ||||||||||| ||||||||||||||| || |||||||||| || |||||    
T  3080 ttacatgttgccaattaccctgttggaatgaagtctcgagtacaacaagt 3031  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 60210 - 60259
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagtgcaccaagt 451  Q
    ||||||||||| | |||||||||||||||| |||||||||| || |||||    
T  60210 ttacatgttgccacttaccctgttggattgcagtctcgagtacaacaagt 60259  T

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Target: scaffold0419 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 8128 - 8168
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagt 442  Q
    ||||||||||| |||||||||||||||||  ||||||||||    
T  8128 ttacatgttgccaattaccctgttggattacagtctcgagt 8168  T

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Target: scaffold0277 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 4253 - 4213
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagt 442  Q
    ||||||||||| |||||||||||||||||  ||||||||||    
T  4253 ttacatgttgccaattaccctgttggattacagtctcgagt 4213  T

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Target: scaffold0277; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 13216 - 13176
Alignment:
Q  402 ttacatgttgctaattaccctgttggattggagtctcgagt 442  Q
    ||||||||||| |||||||||||||||||  ||||||||||    
T  13216 ttacatgttgccaattaccctgttggattacagtctcgagt 13176  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 32002108 - 32002076
Alignment:
Q  189 aacaattaacatactaacatatgccattaaaaa 221  Q
    |||||||||||||||||||| ||||||||||||    
T  32002108 aacaattaacatactaacatttgccattaaaaa 32002076  T

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